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[176578_s_at]

Description R07E4.6 /REP_DB=WormBase Gene ID /WP=CE04821 /GEN=kin-2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      6grp_total > 35      4grp_total > 38      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 547.3
(3)
P 		442.9
(0.4)
A 		308.3
(-3)
A 		349
(-2)
A 		239
B 662.8
(3)
P 		398.2
(-1.5)
A 		313.8
(-3)
A 		429
(-1)
A 		349
C 493.6
(3)
P 		337.9
(-2.8)
A 		333.2
(-3)
A 		348.4
(-2.4)
A 		160
avr 567.9
(3) 		393
(-1.2) 		318.4
(-3) 		375.5
(-1.6) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 461.3
(3)
P 		343.9
(-0.1)
P 		336.1
(-0.3)
P 		249.7
(-2.6)
P 		266.8
(-2.2)
A 		234.7
(-3)
P 		227
B 467.5
(2.7)
P 		436.4
(2)
P 		479.5
(3)
P 		265.7
(-2)
P 		225.1
(-3)
P 		295.2
(-1.3)
P 		254
C 247.7
(-2.1)
P 		513.5
(3)
P 		294.1
(-1.2)
P 		274.2
(-1.6)
M 		201.4
(-3)
M 		327.1
(-0.6)
P 		312
avr 392.2
(1.8) 		431.3
(3) 		369.9
(1.2) 		263.2
(-2) 		231.1
(-3) 		285.7
(-1.4) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 199.3
(3)
P 		96.1
(-1.2)
A 		80.6
(-1.8)
A 		51.1
(-3)
A 		148
B 211.3
(3)
P 		98.3
(-1.9)
A 		72.7
(-3)
A 		91.4
(-2.2)
A 		139
C 163.4
(3)
P 		97.2
(-0.8)
A 		116.1
(0.3)
A 		58.7
(-3)
A 		105
avr 191.3
(3) 		97.2
(-1.5) 		89.8
(-1.9) 		67.1
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 85
(-0.4)
P 		122.3
(3)
P 		73.2
(-1.5)
P 		63.3
(-2.4)
P 		80.5
(-0.9)
A 		57.2
(-3)
P 		65
B 162.7
(3)
P 		145.3
(1.9)
P 		116.4
(-0)
P 		70.4
(-3)
P 		91.4
(-1.6)
P 		110.1
(-0.4)
P 		92
C 91.8
(-0.8)
P 		156.7
(3)
P 		74.9
(-1.8)
P 		55.1
(-3)
M 		65.2
(-2.4)
M 		109.5
(0.2)
P 		102
avr 113.2
(0.8) 		141.4
(3) 		88.2
(-1.1) 		62.9
(-3) 		79
(-1.8) 		92.3
(-0.8) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176578_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17050
Sequence Type Exemplar sequence
Representative Public ID R07E4.6 NCBI
Target Description R07E4.6 /REP_DB=WormBase Gene ID /WP=CE04821 /GEN=kin-2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076598(11), NM_001029671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076598 NCBI Caenorhabditis elegans protein KINase family member (kin-2) (kin-2) mRNA, complete cds. 11/11 A 
NM_001029671 NCBI Caenorhabditis elegans protein KINase family member (kin-2) (kin-2) mRNA, complete cds. 11/11 None
SNAP00000014988 ENSEMBL cdna:SNAP chromosome:CEL140:X:5971653:5974219:-1 11/11 None
GENEFINDER00000014994 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5971653:5978004:-1 11/11 None
R07E4.6a ENSEMBL cdna:known chromosome:CEL140:X:5970607:5977943:-1 gene:R07E4.6 11/11 None
R07E4.6b ENSEMBL cdna:known chromosome:CEL140:X:5971653:5974219:-1 gene:R07E4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5971652-5977812(-) 100.0 100.0
Public Domain and Genome References
Ensembl R07E4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508999 protein KINase family member (kin-2) [Caenorhabditis elegans] gb|AAA80405.1| Protein kinase protein 2, isoform a [Caenorhabditis elegans] sp|P30625|KAPR_CAEEL cAMP-dependent protein kinase regulatory subunit 0.0
blast AAA27980 cAMP-dependent protein kinase subunit R 0.0
blast NP_001024842 protein KINase family member (kin-2) [Caenorhabditis elegans] gb|AAK82909.1| Protein kinase protein 2, isoform b [Caenorhabditis elegans] 0.0
blast CAE68831 Hypothetical protein CBG14791 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003117 EMBL-EBI cAMP-dependent protein kinase regulator, type II PKA R subunit 4.5E-17
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.0E-30
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.3E-30
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.0E-30
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.3E-30
Pfam IPR003117 EMBL-EBI cAMP-dependent protein kinase regulator, type II PKA R subunit 4.5E-17
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.0E-30
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:176578_S_AT
aatcacgagtacgttctcaccatcaacgagggtggatcatttggagaacttgctttgatc
tatggaactccacgtgctgcaaccgtcattgccaagaccgacgtgaaattgtgggccatc
gaccgtctcacctaccgtcgtatcttgatgggatcagtaacaaagaagagaaagatgtat
gacgagttcctctccaaggttcaaatcttggccgatctcgaccagtgggagcgcgctaac
gtggctgatgctcttgagagatgcgacttcgagccaggaactcatgtcgtcgagcaagga
caacccggagacgaattcttcatcattctcgagggagaagccaatgtgttgcagaagaga
agcgacgacgcaccattcgacgttgtcggacatcttggaatgtcggactatttcggagaa
atcgctcttcttctcgaccgcccacgtgccgccaccgttgttgccaaaacccatctcaag
tgcatcaagctggatcgtaaccgcttcgaacgtgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACGAGTACGTTCTCACCATCA 525 169 556 Antisense
GATCTATGGAACTCCACGTGCTGCA 678 419 612 Antisense
CACCTACCGTCGTATCTTGATGGGA 237 201 684 Antisense
ACGAGTTCCTCTCCAAGGTTCAAAT 577 91 737 Antisense
TTCAAATCTTGGCCGATCTCGACCA 123 687 755 Antisense
CGCTAACGTGGCTGATGCTCTTGAG 121 255 789 Antisense
GAGCCAGGAACTCATGTCGTCGAGC 353 385 826 Antisense
GACGCACCATTCGACGTTGTCGGAC 307 379 922 Antisense
CGGAGAAATCGCTCTTCTTCTCGAC 245 243 969 Antisense
AAACCCATCTCAAGTGCATCAAGCT 239 127 1022 Antisense
GATCGTAACCGCTTCGAACGTGTCA 149 417 1048 Antisense
Sequence Source Affymetrix Proprietary Database