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[176569_s_at]

Description Y97E10AR.4 /REP_DB=WormBase Gene ID /WP=CE23171 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 23.4
(-2)
A 		15.7
(-3)
A 		63.7
(3)
A 		31.5
(-1)
A 		48
B 19.4
(-3)
A 		23.6
(-2.8)
A 		115.8
(1.6)
A 		144.5
(3)
A 		125
C 20.6
(-3)
A 		72.9
(1.1)
A 		97.4
(3)
A 		95.4
(2.8)
A 		77
avr 21.1
(-3) 		37.4
(-1.6) 		92.3
(3) 		90.5
(2.8) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 673
1 2 3 4 5 6 range
A 39.8
(-3)
A 		73
(-2.5)
A 		94
(-2.2)
A 		240.9
(-0.2)
P 		403.9
(2.1)
P 		467
(3)
P 		427
B 72.9
(-2.6)
A 		31.8
(-3)
A 		61
(-2.7)
A 		225.2
(-1.2)
P 		400.7
(0.4)
P 		689.7
(3)
P 		658
C 16.4
(-3)
A 		44.6
(-2.7)
A 		146.8
(-1.6)
A 		365.2
(0.8)
M 		370
(0.8)
P 		572.8
(3)
P 		556
avr 43
(-3) 		49.8
(-2.9) 		100.6
(-2.4) 		277.1
(-0.4) 		391.5
(0.9) 		576.5
(3) 		534
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 8.5
(-0.7)
A 		3.4
(-3)
A 		16.6
(3)
A 		4.6
(-2.5)
A 		13
B 6.2
(-2.9)
A 		5.8
(-3)
A 		26.8
(2)
A 		30.8
(3)
A 		25
C 6.8
(-3)
A 		21
(0.1)
A 		33.9
(3)
A 		16.1
(-0.9)
A 		27
avr 7.2
(-3) 		10.1
(-2.1) 		25.8
(3) 		17.2
(0.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 7.3
(-3)
A 		26
(-2)
A 		20.5
(-2.3)
A 		61.1
(-0.2)
P 		121.9
(3)
P 		113.7
(2.6)
P 		115
B 25.4
(-2.6)
A 		10.6
(-3)
A 		14.8
(-2.9)
A 		59.6
(-1.8)
P 		162.8
(0.7)
P 		257.2
(3)
P 		247
C 6.1
(-3)
A 		13.6
(-2.8)
A 		37.4
(-2)
A 		73.4
(-0.8)
M 		119.7
(0.7)
P 		191.8
(3)
P 		186
avr 12.9
(-3) 		16.7
(-2.9) 		24.2
(-2.6) 		64.7
(-1.2) 		134.8
(1.2) 		187.6
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176569_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12344
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.4 NCBI
Target Description Y97E10AR.4 /REP_DB=WormBase Gene ID /WP=CE23171 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072659 NCBI Caenorhabditis elegans Y97E10AR.4 (Y97E10AR.4) mRNA, complete cds. 11/11 None
SNAP00000015071 ENSEMBL cdna:SNAP chromosome:CEL140:V:8010680:8012643:-1 11/11 None
GENEFINDER00000015081 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8010680:8012643:-1 11/11 None
Y97E10AR.4 ENSEMBL cdna:known chromosome:CEL140:V:8010632:8013034:-1 gene:Y97E10AR.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8010680-8013035(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.4
Entrez Gene 179176 Entrez gene
SwissProt Q9N2U7 EMBL-EBI
WormBase CE23171 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60912 Hypothetical protein Y97E10AR.4 [Caenorhabditis elegans] ref|NP_505060.1| Y97E10AR.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 5.2E-30
Pfam IPR006570 EMBL-EBI SPK 5.2E-30
Sequence
Target Sequence 
>C. ELEGANS:176569_S_AT
acacaatccgcagaccaagcgcatccaacgaaacaattccgctctcaccgatgctttgtt
ttggaaaaacttatgcgagaagagtgatgtgaaacgcaacgaaagaacatacttgagacg
attccgagacttgatgcttcccgttctgtatttggcgaagattccaaagttgatgaaaat
ggctctccatttcggattggaacaacctgttcacaaaaattttcttcaagagctcaaaca
ggatgccattgtagaattggacaattccggatgcattgttgcgtatagagaacgcaagaa
aagactatattcagaggcttttgatgacaaagatgagcaagaagtaattgatctagacga
cgacgacgacgaaccagatccaaatattcaacagcctgatgaccacaccgaatcaacatc
aaaggaatgcgcatctgtaaatgttaaatacgaagataacgatgtaaagctttcactcgt
gtcgaatggtgatgacaactcggatgtgaaagaaattgaagatttagttgaagatctaat
tcttaagatccctcgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACAATCCGCAGACCAAGCGCATC 185 111 1068 Antisense
TCCAACGAAACAATTCCGCTCTCAC 117 587 1091 Antisense
CTCTCACCGATGCTTTGTTTTGGAA 323 229 1109 Antisense
GACGATTCCGAGACTTGATGCTTCC 233 379 1184 Antisense
GCTTCCCGTTCTGTATTTGGCGAAG 678 299 1203 Antisense
ATGGCTCTCCATTTCGGATTGGAAC 386 53 1246 Antisense
ACGACGACGAACCAGATCCAAATAT 202 91 1430 Antisense
ATTCAACAGCCTGATGACCACACCG 266 11 1453 Antisense
GACCACACCGAATCAACATCAAAGG 59 383 1468 Antisense
GATGTAAAGCTTTCACTCGTGTCGA 265 409 1528 Antisense
TCTAATTCTTAAGATCCCTCGACGA 638 609 1602 Antisense
Sequence Source Affymetrix Proprietary Database