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[176568_at]

Description Y97E10AR.1 /REP_DB=WormBase Gene ID /WP=CE26317 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_high_8_8 > 32      6grp_highest_nonorm > 70      6grp_total > 17      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 413.2
(3)
P 		102.1
(-2.7)
P 		88.4
(-3)
A 		109.1
(-2.6)
P 		325
B 445.2
(3)
P 		98.3
(-2.6)
A 		72.7
(-3)
A 		126.1
(-2.1)
P 		373
C 399.8
(3)
P 		107.6
(-2.5)
A 		79.7
(-3)
P 		160.5
(-1.5)
P 		320
avr 419.4
(3) 		102.7
(-2.6) 		80.3
(-3) 		131.9
(-2.1) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 621.5
(3)
P 		309
(-1.1)
P 		176.4
(-2.8)
P 		203.3
(-2.4)
P 		226.9
(-2.1)
P 		158.7
(-3)
P 		463
B 653.6
(3)
P 		379.7
(-0)
P 		112.9
(-3)
P 		193.3
(-2.1)
P 		153.1
(-2.6)
P 		156.6
(-2.5)
P 		541
C 557.7
(3)
P 		418.1
(1.1)
P 		140.9
(-2.7)
P 		117.7
(-3)
P 		130.6
(-2.8)
P 		118.8
(-3)
P 		440
avr 610.9
(3) 		368.9
(-0.1) 		143.4
(-3) 		171.4
(-2.6) 		170.2
(-2.7) 		144.7
(-3) 		468
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 150.4
(3)
P 		22.2
(-2.7)
P 		23.1
(-2.7)
A 		16
(-3)
P 		134
B 142
(3)
P 		24.3
(-2.6)
A 		16.8
(-3)
A 		26.9
(-2.5)
P 		125
C 132.3
(3)
P 		30.9
(-2.8)
A 		27.8
(-3)
P 		27.1
(-3)
P 		105
avr 141.6
(3) 		25.8
(-2.8) 		22.6
(-3) 		23.3
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 114.6
(3)
P 		109.9
(2.6)
P 		38.4
(-3)
P 		51.6
(-2)
P 		68.5
(-0.6)
P 		38.6
(-3)
P 		76
B 227.4
(3)
P 		126.4
(-0)
P 		27.4
(-3)
P 		51.2
(-2.3)
P 		62.2
(-2)
P 		58.4
(-2.1)
P 		200
C 206.7
(3)
P 		127.6
(0.4)
P 		35.9
(-2.6)
P 		23.7
(-3)
P 		42.3
(-2.4)
P 		39.8
(-2.5)
P 		183
avr 182.9
(3) 		121.3
(0.5) 		33.9
(-3) 		42.2
(-2.7) 		57.7
(-2) 		45.6
(-2.5) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12103
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.1 NCBI
Target Description Y97E10AR.1 /REP_DB=WormBase Gene ID /WP=CE26317 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072657 NCBI Caenorhabditis elegans Y97E10AR.1 (Y97E10AR.1) mRNA, complete cds. 11/11 None
SNAP00000015068 ENSEMBL cdna:SNAP chromosome:CEL140:V:8004054:8006875:1 11/11 None
GENEFINDER00000015077 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8004054:8006875:1 11/11 None
Y97E10AR.1 ENSEMBL cdna:known chromosome:CEL140:V:8004054:8007308:1 gene:Y97E10AR.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8002988-8006876(+) 98.29 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.1
Entrez Gene 179174 Entrez gene
SwissProt Q9N2U9 EMBL-EBI
WormBase CE33347 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60915 Hypothetical protein Y97E10AR.1 [Caenorhabditis elegans] ref|NP_505058.2| Y97E10AR.1 [Caenorhabditis elegans] 0.0
blast CAE66164 Hypothetical protein CBG11401 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 0.0060
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:176568_AT
actccattcgatccatccttggattcagatgaagaaatggatgatgagtggatccttcag
ccgtctagaacctctccaatcgtttgttgtggaaagtatctctacgttgataaggaggta
ctccgcaagcaatctcgcgtgttctcaaagatctttgagcaaacttatgaacccattacc
attccactgacgtttgacaagtttgaagcattttccagtttattggaattccttcacggt
gaagatatctacttcaattataataacgtcttcaaaatcattgaattggcacgtgctttc
gatgccgatgatattctcgagcaggctattgattggattttcaatgagccgcaaaatgga
aagcttgagaagttggaattttctgagagatatgcaattccagaacttcaaaaagtcatt
actgataatattcttgatcttgatgaattgtttcaaataatgaaacatccggcgaaactt
agtcgtcgcttacttcaaattctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCCATTCGATCCATCCTTGGATT 401 99 1672 Antisense
GATGATGAGTGGATCCTTCAGCCGT 67 411 1711 Antisense
TAGAACCTCTCCAATCGTTTGTTGT 250 653 1737 Antisense
TACTCCGCAAGCAATCTCGCGTGTT 376 645 1790 Antisense
TCTCGCGTGTTCTCAAAGATCTTTG 521 611 1804 Antisense
ACTTATGAACCCATTACCATTCCAC 229 103 1834 Antisense
TTACCATTCCACTGACGTTTGACAA 387 679 1847 Antisense
ATTGGCACGTGCTTTCGATGCCGAT 529 3 1956 Antisense
GATGCCGATGATATTCTCGAGCAGG 94 415 1972 Antisense
AACATCCGGCGAAACTTAGTCGTCG 436 135 2135 Antisense
TAGTCGTCGCTTACTTCAAATTCTT 302 651 2151 Antisense
Sequence Source Affymetrix Proprietary Database