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[176567_at]

Description Y92H12BL.D /REP_DB=WormBase Gene ID /WP=CE26609 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 54      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 126.1
(0)
A 		97.1
(-1.9)
A 		81.6
(-3)
A 		169.5
(3)
M 		88
B 102.5
(3)
A 		52.1
(-0.9)
A 		25.5
(-3)
A 		91.6
(2.2)
A 		77
C 86
(0.9)
A 		45.1
(-3)
A 		60.5
(-1.5)
A 		108.8
(3)
A 		64
avr 104.9
(1.4) 		64.8
(-2.2) 		55.9
(-3) 		123.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 40.1
(-3)
A 		76.2
(0.5)
A 		89.2
(1.8)
A 		87.8
(1.6)
A 		102.1
(3)
A 		75.1
(0.4)
A 		62
B 70.7
(1.4)
A 		90.4
(3)
A 		85
(2.6)
A 		72.6
(1.5)
A 		17.3
(-3)
A 		84.1
(2.5)
A 		73
C 55.6
(-1.8)
A 		105.4
(2.5)
A 		111.2
(3)
A 		76.3
(-0)
A 		41.7
(-3)
A 		73.8
(-0.2)
A 		70
avr 55.5
(-2.7) 		90.7
(2.4) 		95.1
(3) 		78.9
(0.7) 		53.7
(-3) 		77.7
(0.5) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 45.9
(3)
A 		21.1
(-3)
A 		21.3
(-3)
A 		24.8
(-2.1)
M 		25
B 32.7
(3)
A 		12.9
(-1.4)
A 		5.9
(-3)
A 		19.5
(0)
A 		27
C 28.5
(3)
A 		13
(-3)
A 		21.1
(0.1)
A 		18.3
(-0.9)
A 		16
avr 35.7
(3) 		15.7
(-3) 		16.1
(-2.9) 		20.9
(-1.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.4
(-3)
A 		27.1
(2.1)
A 		19.4
(0.1)
A 		22.3
(0.8)
A 		30.8
(3)
A 		18.3
(-0.2)
A 		23
B 24.6
(1.3)
A 		30.1
(2.7)
A 		20.6
(0.3)
A 		19.2
(0)
A 		7
(-3)
A 		31.4
(3)
A 		24
C 20.6
(-0.7)
A 		32.2
(3)
A 		28.3
(1.7)
A 		15.4
(-2.4)
A 		13.5
(-3)
A 		24.7
(0.6)
A 		19
avr 17.5
(-2.8) 		29.8
(3) 		22.8
(-0.3) 		19
(-2.1) 		17.1
(-3) 		24.8
(0.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18644
Sequence Type Exemplar sequence
Representative Public ID Y92H12BL.D NCBI
Target Description Y92H12BL.D /REP_DB=WormBase Gene ID /WP=CE26609 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170800 NCBI Caenorhabditis elegans Y92H12BL.1 (Y92H12BL.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027022 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1345085:1368793:1 11/11 None
SNAP00000027019 ENSEMBL cdna:SNAP chromosome:CEL140:I:1348506:1358402:1 11/11 None
Y92H12BL.1 ENSEMBL cdna:known chromosome:CEL140:I:1348504:1359596:1 gene:Y92H12BL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1355538-1358417(+) 95.1 100.0
Public Domain and Genome References
Gene Title
Ensembl Y92H12BL.1
Entrez Gene 190786 Entrez gene
SwissProt Q8MXQ7 EMBL-EBI
WormBase CE36347 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.16003.1.S1_AT similar to CDK5 regulatory subunit associated protein 1-like 1 cfa
CANINE_2:CFAAFFX.16006.1.S1_S_AT similar to CDK5 regulatory subunit associated protein 1-like 1 cfa
DROSOPHILA_2:1637628_AT dm
DROSGENOME1:153079_AT dm
CHICKEN:GGA.5451.1.S1_AT similar to CDK5 regulatory subunit associated protein 1-like 1 gga
CHICKEN:GGA.5451.2.S1_A_AT similar to CDK5 regulatory subunit associated protein 1-like 1 gga
CHICKEN:GGAAFFX.23974.1.S1_AT similar to CDK5 regulatory subunit associated protein 1-like 1 gga
CHICKEN:GGAAFFX.23974.1.S1_S_AT similar to CDK5 regulatory subunit associated protein 1-like 1 gga
HG-U133_PLUS_2:220039_S_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133A:220039_S_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133A_2:220039_S_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:G8923317_3P_X_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:HS.306668.0.S1_3P_X_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U95C:55579_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133_PLUS_2:210698_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133A:210698_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133A_2:210698_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:G6690166_3P_X_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:G6690166_3P_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:HS2.246403.1.S1_3P_S_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:214877_3P_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133_PLUS_2:1561025_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133_PLUS_2:1561026_A_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133A_2:214877_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133_PLUS_2:214877_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133A:214877_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133_PLUS_2:237353_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133B:237353_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133_PLUS_2:241732_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U133B:241732_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U95B:50578_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U95D:71966_I_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U95D:71968_R_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U95D:73934_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HG-U95E:85369_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HU35KSUBA:R14606_AT CDK5 regulatory subunit associated protein 1-like 1 hs
HU35KSUBB:RC_W86387_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:HS.186918.0.A1_3P_AT CDK5 regulatory subunit associated protein 1-like 1 hs
U133_X3P:HS.294128.0.A1_3P_AT CDK5 regulatory subunit associated protein 1-like 1 hs
MOUSE430_2:1430039_AT CDK5 regulatory subunit associated protein 1-like 1 mm
MOE430B:1430039_AT CDK5 regulatory subunit associated protein 1-like 1 mm
MOUSE430_2:1423953_AT CDK5 regulatory subunit associated protein 1-like 1 mm
MOE430A:1423953_AT CDK5 regulatory subunit associated protein 1-like 1 mm
MOUSE430A_2:1423953_AT CDK5 regulatory subunit associated protein 1-like 1 mm
MG-U74CV2:170623_R_AT CDK5 regulatory subunit associated protein 1-like 1 mm
MOE430B:1437587_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
MOUSE430_2:1437587_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
MOUSE430_2:1447132_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
MOE430B:1447132_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
MOE430B:1459314_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
MOUSE430_2:1459314_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
MU19KSUBB:TC26237_AT CDK5 regulatory subunit associated protein 1-like 1 (Cdkal1), mRNA mm
RG-U34B:RC_AI059730_AT CDK5 regulatory subunit associated protein 1-like 1 (predicted) rn
RAE230B:1381316_AT CDK5 regulatory subunit associated protein 1-like 1 (predicted) rn
RAT230_2:1381316_AT CDK5 regulatory subunit associated protein 1-like 1 (predicted) rn
RG-U34C:RC_AI072258_AT CDK5 regulatory subunit associated protein 1-like 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAM81103 Hypothetical protein Y92H12BL.1 [Caenorhabditis elegans] ref|NP_740783.2| Y92H12BL.1 [Caenorhabditis elegans] 0.0
blast CAE69083 Hypothetical protein CBG15101 [Caenorhabditis briggsae] 0.0
blast EAL25137 GA19679-PA [Drosophila pseudoobscura] 1.0E-130
blast EAL25137 GA19679-PA [Drosophila pseudoobscura] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002792 EMBL-EBI Deoxyribonuclease/rho motif-related TRAM 1.5E-4
Pfam IPR007197 EMBL-EBI Radical SAM 4.1E-21
Pfam IPR005839 EMBL-EBI Protein of unknown function UPF0004 2.6E-8
Pfam IPR002792 EMBL-EBI Deoxyribonuclease/rho motif-related TRAM 1.5E-4
Pfam IPR007197 EMBL-EBI Radical SAM 4.1E-21
Pfam IPR005839 EMBL-EBI Protein of unknown function UPF0004 2.6E-8
Pfam IPR002792 EMBL-EBI Deoxyribonuclease/rho motif-related TRAM 1.5E-4
Pfam IPR007197 EMBL-EBI Radical SAM 4.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027022 3 429-448,490-512,569-591
Sequence
Target Sequence 
>C. ELEGANS:176567_AT
gccacagacatgattctcgcattcccgaccgaaactttggaagatttcgaagaaagtatg
gaacttgtccggaaatacaaattcccatctctattcatcaatcaatattatccgagaagc
ggtactccggccgcacggctcaaaaaaatcgatacggttgaagcgagaaaacggacggcc
gcaatgtctgaattgttcaggtcgtacacaagatatactgacgaacgaatcggagaactt
catcgtgttcttgtgacggaagttgcggcggacaaacttcacggagttggccataacaag
agctacgagcagattctcgttcccctcgagtactgtaaaatgggagaatggatcgaagtc
cgggtgactgctgtgaccaaattcagtatgatctctaagcccgcgtcgattcaggaagat
cagcagccgctgagccttatgcacctcttcccacttgcagtattctgcctcgtactcatc
actctctactcggtcgatcgattcttgtacccgggattctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACAGACATGATTCTCGCATTCC 326 279 412 Antisense
TCGCATTCCCGACCGAAACTTTGGA 280 601 428 Antisense
CAAATTCCCATCTCTATTCATCAAT 152 195 489 Antisense
AACGGACGGCCGCAATGTCTGAATT 456 141 581 Antisense
CGTTCCCCTCGAGTACTGTAAAATG 143 245 729 Antisense
CGAAGTCCGGGTGACTGCTGTGACC 217 253 765 Antisense
CTAAGCCCGCGTCGATTCAGGAAGA 550 225 806 Antisense
GATCAGCAGCCGCTGAGCCTTATGC 439 421 829 Antisense
CCCACTTGCAGTATTCTGCCTCGTA 302 245 861 Antisense
TCTCTACTCGGTCGATCGATTCTTG 195 613 894 Antisense
GATTCTTGTACCCGGGATTCTTTGA 153 427 911 Antisense
Sequence Source Affymetrix Proprietary Database