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[176566_at]

Description Y39G10BM.C /REP_DB=WormBase Gene ID /WP=CE21747 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 20      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 23.7
(-3)
A 		129.4
(3)
A 		91.4
(0.8)
A 		74.7
(-0.1)
A 		106
B 14
(-3)
A 		96.4
(3)
A 		40.9
(-1)
A 		48.2
(-0.5)
A 		82
C 92.6
(1.3)
A 		124.1
(3)
A 		80.4
(0.6)
A 		12.9
(-3)
A 		111
avr 43.4
(-3) 		116.6
(3) 		70.9
(-0.7) 		45.3
(-2.8) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 70.2
(-0.5)
A 		75.4
(-0.1)
A 		34.1
(-3)
A 		120
(3)
A 		93.4
(1.1)
A 		57.8
(-1.3)
A 		86
B 11.9
(-3)
A 		85.7
(2.9)
A 		86.8
(3)
A 		45.6
(-0.3)
A 		46
(-0.3)
A 		65.3
(1.3)
A 		75
C 32.6
(-1.8)
A 		89.1
(3)
A 		83.2
(2.5)
A 		65.4
(1)
A 		18.9
(-3)
A 		49.1
(-0.4)
A 		70
avr 38.2
(-3) 		83.4
(3) 		68
(1) 		77
(2.2) 		52.8
(-1.1) 		57.4
(-0.5) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 8.6
(-3)
A 		28.1
(3)
A 		23.9
(1.7)
A 		10.9
(-2.3)
A 		20
B 4.5
(-3)
A 		23.8
(3)
A 		9.5
(-1.4)
A 		10.3
(-1.2)
A 		19
C 30.6
(2.1)
A 		35.7
(3)
A 		28
(1.6)
A 		2.2
(-3)
A 		34
avr 14.6
(-1.1) 		29.2
(3) 		20.5
(0.6) 		7.8
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.9
(-1.6)
A 		26.8
(2.1)
A 		7.4
(-3)
A 		30.4
(3)
A 		28.2
(2.4)
A 		14.1
(-1.3)
A 		23
B 4.1
(-3)
A 		28.5
(3)
A 		21.1
(1.2)
A 		12.1
(-1)
A 		18.7
(0.6)
A 		24.3
(2)
A 		24
C 12.1
(-1.3)
A 		27.2
(3)
A 		21.2
(1.3)
A 		13.1
(-1)
A 		6.1
(-3)
A 		16.4
(-0.1)
A 		21
avr 9.7
(-3) 		27.5
(3) 		16.6
(-0.7) 		18.5
(-0) 		17.7
(-0.3) 		18.3
(-0.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18659
Sequence Type Exemplar sequence
Representative Public ID Y39G10BM.C NCBI
Target Description Y39G10BM.C /REP_DB=WormBase Gene ID /WP=CE21747 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39G10BM.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39G10BM.C Y39G10BM.C /REP_DB=WormBase Gene ID /WP=CE21747 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058537 11/11 Negative Strand Matching Probes A 
NM_001026489 11/11 Negative Strand Matching Probes None
NM_001026490 11/11 Negative Strand Matching Probes None
GENEFINDER00000024826 11/11 Negative Strand Matching Probes None
SNAP00000024819 11/11 Negative Strand Matching Probes None
W03F11.6a 11/11 Negative Strand Matching Probes A 
W03F11.6c 11/11 Negative Strand Matching Probes A 
W03F11.6e 11/11 Negative Strand Matching Probes A 
W03F11.6d 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2195626-2195971(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176566_AT
gaattgtgagcgccgcgttgagaccacaaattctcgcctggcgcatcgtggtgtcgagaa
gatgaatcacatcgccggtcgcgtcgtgatcattcagatgaatgtccaacagagcccgcg
ccgccggacggatgacactttgaagcactgcaaccaatcgccggaatattctctcaattt
ccacagatattttgccatatctcgacgctttcagctcagtgtcccgctcgacaagatgat
tgaattccgatgcgttggcaagccaaaagatcagatcatccttcgacgagcattcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTGAGCGCCGCGTTGAGACC 620 323 27 Antisense
CACAAATTCTCGCCTGGCGCATCGT 403 195 51 Antisense
GAAGATGAATCACATCGCCGGTCGC 275 339 84 Antisense
GGTCGCGTCGTGATCATTCAGATGA 36 503 103 Antisense
CGCCGGACGGATGACACTTTGAAGC 266 257 148 Antisense
GCAACCAATCGCCGGAATATTCTCT 238 321 176 Antisense
GAATATTCTCTCAATTTCCACAGAT 41 327 190 Antisense
GATATTTTGCCATATCTCGACGCTT 345 427 212 Antisense
TCAGTGTCCCGCTCGACAAGATGAT 104 623 242 Antisense
GAATTCCGATGCGTTGGCAAGCCAA 397 323 268 Antisense
AGATCATCCTTCGACGAGCATTCCT 277 67 299 Antisense
Sequence Source Affymetrix Proprietary Database