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[176565_s_at]

Description Y69A2AR.EE /REP_DB=WormBase Gene ID /WP=CE26563 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 45      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 80      6grp_total > 46      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 196
(0.6)
P 		236.5
(3)
P 		180.6
(-0.3)
P 		134.1
(-3)
P 		102
B 301.7
(3)
P 		156.2
(-3)
P 		177.8
(-2.1)
P 		175.7
(-2.2)
P 		146
C 261.9
(3)
P 		146.7
(-2.8)
P 		190.3
(-0.6)
P 		141.9
(-3)
P 		120
avr 253.2
(3) 		179.8
(-1.3) 		182.9
(-1.1) 		150.6
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 262.1
(3)
P 		256.8
(2.7)
P 		170.8
(-2.1)
P 		210.3
(0.1)
P 		154.8
(-3)
P 		240.8
(1.8)
P 		107
B 241.5
(-0.2)
P 		293.9
(3)
P 		261.1
(1)
P 		232.8
(-0.7)
P 		195.6
(-3)
P 		257
(0.7)
P 		98
C 214.1
(-0.5)
P 		271.6
(2.5)
P 		223.8
(0)
P 		185.1
(-2)
P 		165.4
(-3)
P 		282.2
(3)
P 		117
avr 239.2
(1) 		274.1
(3) 		218.6
(-0.3) 		209.4
(-0.8) 		171.9
(-3) 		260
(2.2) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 71.4
(3)
P 		51.3
(0.7)
P 		47.2
(0.2)
P 		19.6
(-3)
P 		52
B 96.2
(3)
P 		38.6
(-2.9)
P 		41.2
(-2.6)
P 		37.4
(-3)
P 		59
C 86.7
(3)
P 		42.2
(-1.3)
P 		66.3
(1.1)
P 		23.9
(-3)
P 		63
avr 84.8
(3) 		44
(-1.2) 		51.6
(-0.4) 		27
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 48.3
(-1.8)
P 		91.3
(3)
P 		37.2
(-3)
P 		53.3
(-1.2)
P 		46.7
(-1.9)
P 		58.6
(-0.6)
P 		54
B 84
(0.7)
P 		97.8
(3)
P 		63.4
(-2.7)
P 		61.7
(-3)
P 		79.5
(-0)
P 		95.8
(2.7)
P 		36
C 79.3
(1.4)
P 		82.9
(1.8)
P 		57
(-0.9)
P 		37.2
(-3)
P 		53.5
(-1.3)
P 		94.5
(3)
P 		57
avr 70.5
(-0) 		90.7
(3) 		52.5
(-2.7) 		50.7
(-3) 		59.9
(-1.6) 		83
(1.8) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176565_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19163
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.EE NCBI
Target Description Y69A2AR.EE /REP_DB=WormBase Gene ID /WP=CE26563 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028390 NCBI Caenorhabditis elegans Resistance to Inhibitors of Cholinesterase family member (ric-8) (ric-8) mRNA, complete cds. 11/11 None
SNAP00000018826 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2648551:2649502:1 9/11 None
GENEFINDER00000018849 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2641309:2649502:1 11/11 None
Y69A2AR.2a ENSEMBL cdna:known chromosome:CEL140:IV:2642976:2650103:1 gene:Y69A2AR.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018825 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177048 2 1 NM_001028390 175668_s_at (11), 176565_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2641314-2649508(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y69A2AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68564 Resistance to inhibitors of cholinesterase protein 8, isoform a [Caenorhabditis elegans] ref|NP_001023561.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] gb|AAG10199.1| synembryn [Caenorhabditis elegans] 0.0
blast CAE68210 Hypothetical protein CBG13878 [Caenorhabditis briggsae] 0.0
blast AAK68564 Resistance to inhibitors of cholinesterase protein 8, isoform a [Caenorhabditis elegans] ref|NP_001023561.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] gb|AAG10199.1| synembryn [Caenorhabditis elegans] 3.0E-69
blast CAE68210 Hypothetical protein CBG13878 [Caenorhabditis briggsae] 3.0E-55
blast AAP31421 Resistance to inhibitors of cholinesterase protein 8, isoform b [Caenorhabditis elegans] ref|NP_001023562.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] 1.0E-54
Sequence
Target Sequence 
>C. ELEGANS:176565_S_AT
caacgaaagatgtcgccgccgagttccttttcattatttgcaagagatcagtgaatcgaa
tgatcaaataccttggattcggccactcggccggtcacctcgcaaatttgggtcttctcg
gacaaatcaatcaaccaaaacacgcgtcggacagtgaggatagtgaaactgaggattata
atcagattaaggatagtgtaaatccagtgaccggagcaatttatccatcggatcacggaa
gtgcacttgccggaatgtctgaagagcaaaaagagtatgaagcgatgaagctggttgatg
ctatgaatcaaatgatggaaactgcagaaaaatctggaaaacaattggtgaaatcccccc
aaaaaaatataaaaaattgcacgaaatttgatgaaattcatcaaaatcgtgacgatattt
tgcagaaaattctaattttttggtgtaaaattggaaaaatatcgaataaacatatgaaaa
aaaactcgaaaattggaattgtgaagcccggaaccattggagatgacggaaaaattcgcg
aagtcagccatgtgttggagctcctgaagaatgctccagaaccagcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGAAAGATGTCGCCGCCGAGTT 644 187 1598 Antisense
CGCCGAGTTCCTTTTCATTATTTGC 236 257 1614 Antisense
CAAATACCTTGGATTCGGCCACTCG 327 191 1662 Antisense
GGTCACCTCGCAAATTTGGGTCTTC 368 503 1690 Antisense
TTGGGTCTTCTCGGACAAATCAATC 637 705 1705 Antisense
ATCAACCAAAACACGCGTCGGACAG 228 25 1727 Antisense
GGATCACGGAAGTGCACTTGCCGGA 622 509 1827 Antisense
GCACTTGCCGGAATGTCTGAAGAGC 671 315 1840 Antisense
GTGAAGCCCGGAACCATTGGAGATG 207 481 2098 Antisense
AGTCAGCCATGTGTTGGAGCTCCTG 583 61 2139 Antisense
TGAAGAATGCTCCAGAACCAGCGCC 324 575 2162 Antisense
Sequence Source Affymetrix Proprietary Database