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[176564_at]

Description Y71G12B.CC /REP_DB=WormBase Gene ID /WP=CE22917 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 44      6grp_total > 61      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1667
1 2 3 4 range
A 421.4
(-2.2)
P 		1481.3
(1.6)
P 		1851.7
(3)
P 		213.6
(-3)
P 		1638
B 420.1
(-2.2)
P 		1554.9
(2.4)
P 		1707.9
(3)
P 		228
(-3)
P 		1480
C 419.9
(-2.1)
P 		1481.7
(2)
P 		1755.2
(3)
P 		184.3
(-3)
P 		1571
avr 420.5
(-2.2) 		1506
(2) 		1771.6
(3) 		208.6
(-3) 		1563

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2030
1 2 3 4 5 6 range
A 1273.4
(-0.2)
P 		1238.5
(-0.3)
P 		1783.7
(1.5)
P 		2228.5
(3)
P 		1172.4
(-0.5)
P 		425.1
(-3)
P 		1803
B 1490.6
(0.8)
P 		1193.7
(-0.4)
P 		1666.9
(1.5)
P 		2061.1
(3)
P 		1218.8
(-0.3)
P 		508.5
(-3)
P 		1553
C 1418.7
(-0.1)
P 		1235.7
(-0.6)
P 		1803.9
(1.1)
P 		2455.2
(3)
P 		1006.2
(-1.3)
P 		435.5
(-3)
P 		2020
avr 1394.2
(0.1) 		1222.6
(-0.4) 		1751.5
(1.3) 		2248.3
(3) 		1132.5
(-0.7) 		456.4
(-3) 		1792
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 581
1 2 3 4 range
A 153.4
(-1.4)
P 		321.6
(0.8)
P 		484.1
(3)
P 		31.3
(-3)
P 		453
B 134
(-1.5)
P 		384
(2.8)
P 		395.8
(3)
P 		48.6
(-3)
P 		347
C 139
(-1.9)
P 		426
(1.1)
P 		611.7
(3)
P 		31.1
(-3)
P 		581
avr 142.1
(-1.6) 		377.2
(1.4) 		497.2
(3) 		37
(-3) 		460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 234.7
(-1.3)
P 		440.5
(1.4)
P 		388.4
(0.7)
P 		565.2
(3)
P 		353.8
(0.3)
P 		103.5
(-3)
P 		462
B 518.6
(2.5)
P 		397.3
(0.5)
P 		404.8
(0.6)
P 		545.9
(3)
P 		495.2
(2.1)
P 		189.6
(-3)
P 		356
C 525.8
(3)
P 		377.1
(0.7)
P 		459.1
(1.9)
P 		493.7
(2.5)
P 		325.6
(-0.2)
P 		145.8
(-3)
P 		380
avr 426.4
(1.3) 		405
(1) 		417.4
(1.2) 		534.9
(3) 		391.5
(0.8) 		146.3
(-3) 		389
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18666
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.CC NCBI
Target Description Y71G12B.CC /REP_DB=WormBase Gene ID /WP=CE22917 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058494(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058494 NCBI Caenorhabditis elegans Y71G12B.6 (Y71G12B.6) mRNA, complete cds. 9/11 None
GENEFINDER00000001806 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1793261:1796684:1 9/11 None
Y71G12B.6.2 ENSEMBL cdna:known chromosome:CEL140:I:1793253:1796342:1 gene:Y71G12B.6 9/11 None
Y71G12B.6.1 ENSEMBL cdna:known chromosome:CEL140:I:1793255:1796421:1 gene:Y71G12B.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001794 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1793260-1796342(+) 98.72 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.6
Entrez Gene 171744 Entrez gene
SwissProt Q95XM5 EMBL-EBI
WormBase CE29138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73932 Hypothetical protein Y71G12B.6 [Caenorhabditis elegans] ref|NP_490895.1| Y71G12B.6 [Caenorhabditis elegans] 0.0
blast CAE74477 Hypothetical protein CBG22228 [Caenorhabditis briggsae] 1.0E-136
Sequence
Target Sequence 
>C. ELEGANS:176564_AT
aacaccatactttacgacaatttgctgctccaggggtaaaactaagcgggaaattcaaaa
aaagtgtctaaaattcgtttctaaatttttaaaactctcaaaaagtcaaaacttaactaa
tttccaggaatccacaatcacaaatctgcaagaagccactgataaatcggttatcgatga
gattaacacaatcaatccatcccatttggtttatttcggaaatgaaaccgactcattcga
aggcgactgcttcactctccgtaccaatatggcgactaatctctattttccatggcttct
cgcaagtattgccgaaaagttctccctacacttcacccattttggaaatacttctatgag
ccaagagtcttcagctcttgccgttaaaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACCATACTTTACGACAATTTGC 256 137 831 Antisense
GACAATTTGCTGCTCCAGGGGTAAA 255 363 846 Antisense
GGAATCCACAATCACAAATCTGCAA 202 533 957 Antisense
TTAACACAATCAATCCATCCCATTT 574 683 1013 Antisense
ACCGACTCATTCGAAGGCGACTGCT 241 89 1057 Antisense
TTCACTCTCCGTACCAATATGGCGA 496 687 1081 Antisense
GCGACTAATCTCTATTTTCCATGGC 507 289 1102 Antisense
TTCCATGGCTTCTCGCAAGTATTGC 205 699 1118 Antisense
GTATTGCCGAAAAGTTCTCCCTACA 520 451 1136 Antisense
TCCCTACACTTCACCCATTTTGGAA 487 595 1153 Antisense
TCTTCAGCTCTTGCCGTTAAAGGAT 154 617 1198 Antisense
Sequence Source Affymetrix Proprietary Database