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[176562_at]

Description Y39G10BM.F /REP_DB=WormBase Gene ID /WP=CE21748 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 0      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 67.9
(3)
A 		9.8
(-3)
A 		10.4
(-2.9)
A 		19.8
(-2)
A 		58
B 17.2
(-0)
A 		5.1
(-3)
A 		29.3
(3)
A 		16.6
(-0.1)
A 		24
C 52.4
(2.4)
A 		5.2
(-3)
A 		9.6
(-2.5)
A 		57.5
(3)
A 		52
avr 45.8
(3) 		6.7
(-3) 		16.4
(-1.5) 		31.3
(0.8) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 19.1
(2.8)
A 		7.5
(-3)
A 		14.9
(0.7)
A 		19.4
(3)
A 		12.4
(-0.5)
A 		8.9
(-2.3)
A 		12
B 7.5
(-3)
A 		61.6
(3)
A 		11.3
(-2.6)
A 		8.2
(-2.9)
A 		7.7
(-3)
A 		20.4
(-1.6)
A 		54
C 10.8
(-0.7)
A 		11.8
(0.1)
A 		7.8
(-3)
A 		15.6
(3)
A 		8.4
(-2.5)
A 		12.7
(0.8)
A 		8
avr 12.5
(-2) 		27
(3) 		11.3
(-2.4) 		14.4
(-1.3) 		9.5
(-3) 		14
(-1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.7
(3)
A 		2.1
(-3)
A 		2.7
(-2.8)
A 		2.9
(-2.8)
A 		23
B 5.5
(1.6)
A 		1.3
(-3)
A 		6.8
(3)
A 		3.5
(-0.6)
A 		6
C 17.3
(3)
A 		1.5
(-3)
A 		3.4
(-2.3)
A 		9.7
(0.1)
A 		16
avr 15.8
(3) 		1.6
(-3) 		4.3
(-1.9) 		5.4
(-1.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.5
(-0.1)
A 		2.7
(-1.9)
A 		3.2
(-0.8)
A 		4.9
(3)
A 		3.7
(0.3)
A 		2.2
(-3)
A 		3
B 2.6
(-2.9)
A 		20.5
(3)
A 		2.7
(-2.8)
A 		2.2
(-3)
A 		3.1
(-2.7)
A 		7.6
(-1.2)
A 		18
C 4
(2.2)
A 		3.6
(1.2)
A 		2
(-3)
A 		3.1
(-0.1)
A 		2.7
(-1.2)
A 		4.3
(3)
A 		2
avr 3.4
(-2.2) 		8.9
(3) 		2.6
(-3) 		3.4
(-2.2) 		3.2
(-2.4) 		4.7
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18650
Sequence Type Exemplar sequence
Representative Public ID Y39G10BM.F NCBI
Target Description Y39G10BM.F /REP_DB=WormBase Gene ID /WP=CE21748 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024826 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2185758:2209334:1 11/11 None
SNAP00000024818 ENSEMBL cdna:SNAP chromosome:CEL140:I:2192429:2192752:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2192428-2192995(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18989 Hypothetical protein W03F11.6a [Caenorhabditis elegans] ref|NP_490938.3| W03F11.6a [Caenorhabditis elegans] 0.0
blast AAD20441 AF-6 [Caenorhabditis elegans] 0.0
blast CAE60305 Hypothetical protein CBG03894 [Caenorhabditis briggsae] 0.0
blast CAE60305 Hypothetical protein CBG03894 [Caenorhabditis briggsae] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-6
Sequence
Target Sequence 
>C. ELEGANS:176562_AT
cgagtcaactcggaatctcgtctccacaaaacagaaaccacatttggagtcggttcttct
tctccaaccatcccatcatcttatgcacttcccagacaccaacaaacttctcgttatatc
tatcatcgccgagcagcatccacagatgctgagcccctcctcgcatcgtttgatgcacct
gtgccccgaccccgtcgggtcactttttcgcagacatctgcggcaaagccaccgccgcca
gttccgatacccgtcacgaggtttcagacggctgcacctgctgcgaatttcagtgctaga
cagcttaaacatctcatgtccggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGTCAACTCGGAATCTCGTCTCC 104 251 19 Antisense
CACATTTGGAGTCGGTTCTTCTTCT 700 193 57 Antisense
CCCAGACACCAACAAACTTCTCGTT 129 259 109 Antisense
TATCTATCATCGCCGAGCAGCATCC 216 657 135 Antisense
AGCATCCACAGATGCTGAGCCCCTC 158 79 153 Antisense
CCTCCTCGCATCGTTTGATGCACCT 450 267 174 Antisense
CAGACATCTGCGGCAAAGCCACCGC 397 205 229 Antisense
TTCCGATACCCGTCACGAGGTTTCA 108 693 260 Antisense
TCACGAGGTTTCAGACGGCTGCACC 299 621 272 Antisense
CACCTGCTGCGAATTTCAGTGCTAG 686 201 293 Antisense
AGCTTAAACATCTCATGTCCGGCTC 123 79 320 Antisense
Sequence Source Affymetrix Proprietary Database