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[176560_at]

Description Y108G3AL.C /REP_DB=WormBase Gene ID /WP=CE26037 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 04      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 25.5
(-3)
A 		28.4
(-2.3)
A 		38.7
(0.3)
A 		49.8
(3)
A 		24
B 38.9
(2.8)
A 		39.6
(3)
P 		34.6
(1.9)
A 		11.7
(-3)
A 		28
C 20.6
(-3)
A 		77.2
(0.7)
A 		41.4
(-1.6)
A 		111.7
(3)
P 		91
avr 28.3
(-3) 		48.4
(1.1) 		38.2
(-1) 		57.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 62
(3)
P 		45.7
(0)
P 		35.4
(-1.8)
A 		48.5
(0.6)
P 		52.3
(1.2)
P 		28.9
(-3)
A 		33
B 42.4
(3)
P 		32.7
(1.3)
A 		14.6
(-2)
A 		27.7
(0.4)
A 		40
(2.6)
A 		8.9
(-3)
A 		34
C 44.3
(2.4)
P 		48.4
(3)
P 		29.9
(0.5)
A 		33
(0.9)
A 		4.2
(-3)
A 		32.3
(0.8)
P 		44
avr 49.6
(3) 		42.3
(1.3) 		26.6
(-2.3) 		36.4
(-0) 		32.2
(-1) 		23.4
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.3
(1.8)
A 		6.2
(-3)
A 		10.1
(3)
A 		7.3
(-1.3)
A 		4
B 12.4
(3)
A 		9.8
(1.4)
P 		8
(0.3)
A 		2.5
(-3)
A 		10
C 6.8
(-3)
A 		22.2
(3)
A 		14.4
(-0)
A 		18.8
(1.7)
P 		15
avr 9.5
(-3) 		12.7
(3) 		10.8
(-0.6) 		9.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.4
(-0.2)
P 		16.3
(3)
P 		7.7
(-2.5)
A 		12.3
(0.4)
P 		15.8
(2.7)
P 		7
(-3)
A 		9
B 14.8
(2.3)
P 		10.9
(0.5)
A 		3.5
(-2.9)
A 		7.3
(-1.1)
A 		16.2
(3)
A 		3.3
(-3)
A 		13
C 16.4
(3)
P 		14.8
(2.4)
P 		7.6
(-0.5)
A 		6.6
(-0.9)
A 		1.4
(-3)
A 		10.8
(0.8)
P 		15
avr 14.2
(3) 		14
(2.8) 		6.3
(-3) 		8.7
(-1.2) 		11.1
(0.6) 		7
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19480
Sequence Type Exemplar sequence
Representative Public ID Y108G3AL.C NCBI
Target Description Y108G3AL.C /REP_DB=WormBase Gene ID /WP=CE26037 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070746
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023638 ENSEMBL cdna:SNAP chromosome:CEL140:V:163716:172032:-1 None
NM_070746 NCBI Caenorhabditis elegans Y108G3AL.3 (Y108G3AL.3) mRNA, complete cds. A 
Y108G3AL.3 ENSEMBL cdna:known chromosome:CEL140:V:163670:172039:-1 gene:Y108G3AL.3 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:171159-174575(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y108G3AL.3
Entrez Gene 190931 Entrez gene
SwissProt Q95Y36 EMBL-EBI
WormBase CE29094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00859 Hypothetical protein Y108G3AL.3 [Caenorhabditis elegans] ref|NP_503147.1| Y108G3AL.3 [Caenorhabditis elegans] 0.0
blast CAE62358 Hypothetical protein CBG06438 [Caenorhabditis briggsae] 1.0E-165
blast CAE62356 Hypothetical protein CBG06436 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:176560_AT
tcaagcatcgttcaacatcggcgcaaacgtcccttctattttctcgtggactacgaggtg
gaagccttcgaaatcagcgacactgtcaaagaccatgtgtcgtcaaacttcttgactata
gtcgattttcatcactgcttccgaatttattttgccatttcttcaacttcccatatcaaa
cctcacaaccgtttttcaacatcccccgaatctcatttcagttgtaacaatttccgagac
actaactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagaagaaaggcggggcactc
tggaagggcgggcgtgaaaacggaaggctgctaaaagagaaaaagagaagaaggattttt
gatcgtcaacaaatggaaactgatgtctatattatgattcataaggagtactctcagctt
attgatactttgattgaatgcttctgcgaagacgttggaacgactcccac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCATCGTTCAACATCGGCGCA 472 631 136 Antisense
TCCCTTCTATTTTCTCGTGGACTAC 438 597 165 Antisense
GGAAGCCTTCGAAATCAGCGACACT 418 529 195 Antisense
AAGACCATGTGTCGTCAAACTTCTT 170 155 224 Antisense
ATAGTCGATTTTCATCACTGCTTCC 170 23 253 Antisense
ACTGCTTCCGAATTTATTTTGCCAT 204 99 269 Antisense
CATTTCTTCAACTTCCCATATCAAA 542 215 291 Antisense
TATCAAACCTCACAACCGTTTTTCA 457 641 309 Antisense
TCCCCCGAATCTCATTTCAGTTGTA 652 595 337 Antisense
AAGAAAGGCGGGGCACTCTGGAAGG 230 153 478 Antisense
GCGAAGACGTTGGAACGACTCCCAC 450 289 641 Antisense
Sequence Source Affymetrix Proprietary Database