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[176559_at]

Description Y92H12BL.B /REP_DB=WormBase Gene ID /WP=CE26607 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 51      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 75      6grp_total > 42      4grp_total > 50      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 1267.3
(-2.9)
P 		1559
(3)
P 		1452.2
(0.8)
P 		1263.9
(-3)
P 		295
B 1203.3
(-3)
P 		1606.8
(3)
P 		1528.2
(1.8)
P 		1284.6
(-1.8)
P 		404
C 1431.3
(-0.1)
P 		1493.2
(0.9)
P 		1623.6
(3)
P 		1257.1
(-3)
P 		367
avr 1300.6
(-2.3) 		1553
(3) 		1534.7
(2.6) 		1268.5
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 673
1 2 3 4 5 6 range
A 1032.6
(2.3)
P 		939.4
(0.5)
P 		1069.5
(3)
P 		885.7
(-0.5)
P 		1000.8
(1.7)
P 		753.8
(-3)
P 		316
B 881.3
(-0.9)
P 		1074
(1.6)
P 		1143.5
(2.6)
P 		1175.7
(3)
P 		1154.5
(2.7)
P 		727.3
(-3)
P 		448
C 985.3
(0.6)
P 		944.4
(0.2)
P 		1252.9
(3)
P 		945.8
(0.3)
P 		946.3
(0.3)
P 		580.3
(-3)
P 		673
avr 966.4
(0.6) 		985.9
(0.8) 		1155.3
(3) 		1002.4
(1) 		1033.9
(1.4) 		687.1
(-3) 		468
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 461.4
(3)
P 		338.4
(0.3)
P 		379.6
(1.2)
P 		185
(-3)
P 		276
B 383.7
(2.4)
P 		396.9
(3)
P 		354.1
(0.9)
P 		273.7
(-3)
P 		123
C 473.8
(1.4)
P 		429.3
(0.7)
P 		565.9
(3)
P 		212
(-3)
P 		354
avr 439.6
(3) 		388.2
(1.6) 		433.2
(2.8) 		223.6
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 190.4
(-2.7)
P 		334.1
(3)
P 		232.9
(-1)
P 		224.6
(-1.4)
P 		302
(1.7)
P 		183.5
(-3)
P 		151
B 306.7
(-1.9)
P 		357.5
(-0.4)
P 		277.7
(-2.8)
P 		311.4
(-1.8)
P 		469
(3)
P 		271.2
(-3)
P 		198
C 365.2
(3)
P 		288.2
(0.4)
P 		318.9
(1.4)
P 		190.2
(-3)
P 		306.2
(1)
P 		194.3
(-2.9)
P 		175
avr 287.4
(-0) 		326.6
(1.6) 		276.5
(-0.5) 		242.1
(-1.9) 		359.1
(3) 		216.3
(-3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18639
Sequence Type Exemplar sequence
Representative Public ID Y92H12BL.B NCBI
Target Description Y92H12BL.B /REP_DB=WormBase Gene ID /WP=CE26607 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058442(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058442 NCBI Caenorhabditis elegans K12C11.1 (K12C11.1) mRNA, complete cds. 10/11 A 
GENEFINDER00000027024 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1342134:1344693:-1 11/11 None
K12C11.1.1 ENSEMBL cdna:known chromosome:CEL140:I:1341221:1344693:-1 gene:K12C11.1 10/11 None
K12C11.1.2 ENSEMBL cdna:known chromosome:CEL140:I:1341236:1344695:-1 gene:K12C11.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1342109-1344693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12C11.1
Entrez Gene 171704 Entrez gene
SwissProt O44995 EMBL-EBI
WormBase CE26819 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253719_AT Xaa-Pro dipeptidase, putative / prolidase, putative / imidodipeptidase, putative at
CANINE_2:CFAAFFX.11958.1.S1_S_AT similar to Xaa-Pro dipeptidase (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase) cfa
DROSOPHILA_2:1640743_AT Dipeptidase C dm
DROSGENOME1:153596_AT Dipeptidase C dm
HG-U133_PLUS_2:202108_AT peptidase D hs
HG-U133A:202108_AT peptidase D hs
HG-FOCUS:202108_AT peptidase D hs
HG-U133A_2:202108_AT peptidase D hs
HU35KSUBC:RC_AA135558_S_AT peptidase D hs
HUGENEFL:J04605_AT peptidase D hs
U133_X3P:G4557834_3P_AT peptidase D hs
HG-U95AV2:36109_AT peptidase D hs
HG-U95B:44438_AT Peptidase D hs
HU35KSUBB:RC_W87536_AT Peptidase D hs
MG-U74AV2:101042_F_AT peptidase 4 mm
MU11KSUBA:U51014_S_AT peptidase 4 mm
MOE430A:1416712_AT peptidase 4 mm
MOUSE430A_2:1416712_AT peptidase 4 mm
MOUSE430_2:1416712_AT peptidase 4 mm
MU19KSUBB:TC26248_S_AT Peptidase 4 (Pep4), mRNA mm
RG-U34B:RC_AA899762_G_AT peptidase D rn
RG-U34B:RC_AA899762_AT peptidase D rn
RG-U34C:RC_AI233224_AT peptidase D rn
RAE230A:1370699_A_AT peptidase D rn
RAT230_2:1370699_A_AT peptidase D rn
RAE230A:1390304_AT Peptidase D rn
RAT230_2:1390304_AT Peptidase D rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18972 Hypothetical protein K12C11.1 [Caenorhabditis elegans] ref|NP_490843.1| K12C11.1 [Caenorhabditis elegans] 0.0
blast CAE69085 Hypothetical protein CBG15103 [Caenorhabditis briggsae] emb|CAE74545.1| Hypothetical protein CBG22302 [Caenorhabditis briggsae] 0.0
blast AAH54994 MGC64570 protein [Xenopus laevis] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR007865 EMBL-EBI Peptidase M24, X-Pro dipeptidase/aminopeptidase N-terminal 1.8E-21
Pfam IPR000994 EMBL-EBI Peptidase M24 3.9E-25
Pfam IPR000994 EMBL-EBI Peptidase M24 7.2E-8
Sequence
Target Sequence 
>C. ELEGANS:176559_AT
tcagctggagagtctgttccgtcacacatcctactaccacggaggctgccgacatctcgc
ctacacctgcatcgccgccaccggctgcaacggctcagtgcttcactacggccacgcgaa
tgctccaaacgacaagttcatcaaggacggcgacatgtgccttttcgatatgggacccga
atacaactgctacgcatcagacatcaccacctcattcccgtcaaacggaaaattcaccga
aaaacagaaaatcgtgtacaacgctgtgctcgccgccaatcttgccgtcttgaaagcggc
aaaaccgggcgttcgctggacggatatgcacattttgtcggaaaaagtgattctggagca
tctcaagcaggctgggctcatcgtcggcgacattgataaggctgtggaggcacgtgtagg
cgcggtcttcatgcctcatggattgggacacttgatcgggttggatgtgcacgattgtgg
aggatatatgggtgatgcgacgccgagatcaacgcttcccgggctcaagagcctcagaac
gacgagaacgctgatggagagaatggtgaatagctctgcaacccgtcaaaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCTGGAGAGTCTGTTCCGTCAC 423 623 663 Antisense
CACGCGAATGCTCCAAACGACAAGT 38 201 775 Antisense
ATGTGCCTTTTCGATATGGGACCCG 104 49 817 Antisense
TGGGACCCGAATACAACTGCTACGC 26 553 833 Antisense
AACTGCTACGCATCAGACATCACCA 28 143 847 Antisense
AAATCGTGTACAACGCTGTGCTCGC 137 119 911 Antisense
GGCGTTCGCTGGACGGATATGCACA 190 541 970 Antisense
ATCTCAAGCAGGCTGGGCTCATCGT 155 31 1022 Antisense
AGGCTGTGGAGGCACGTGTAGGCGC 17 53 1061 Antisense
CATGCCTCATGGATTGGGACACTTG 180 211 1092 Antisense
ATAGCTCTGCAACCCGTCAAAACAG 188 21 1232 Antisense
Sequence Source Affymetrix Proprietary Database