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[176557_at]

Description C52D10.11 /REP_DB=WormBase Gene ID /WP=CE17594 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 01      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 40      6grp_total > 04      4grp_total > 22      6grp_cgc > 10      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 792
1 2 3 4 range
A 1140.3
(2.5)
P 		490.5
(-2.9)
P 		477.4
(-3)
P 		1205.5
(3)
P 		728
B 1037.6
(2.3)
P 		484.7
(-2.4)
P 		413.5
(-3)
P 		1119.8
(3)
P 		706
C 1147.5
(3)
P 		650
(-1.4)
P 		464.2
(-3)
P 		947.2
(1.2)
P 		683
avr 1108.5
(3) 		541.7
(-2.2) 		451.7
(-3) 		1090.8
(2.8) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1095
1 2 3 4 5 6 range
A 593.1
(0.2)
P 		715.8
(2)
P 		698.6
(1.7)
P 		783.2
(3)
P 		430.2
(-2.2)
P 		379.2
(-3)
P 		404
B 732.2
(3)
P 		585.7
(0.7)
P 		616.6
(1.2)
P 		563.5
(0.4)
P 		647
(1.7)
P 		346.1
(-3)
P 		386
C 1441
(3)
P 		542.6
(-2)
P 		603
(-1.6)
P 		680.5
(-1.2)
P 		574.2
(-1.8)
P 		354
(-3)
P 		1087
avr 922.1
(3) 		614.7
(-0.3) 		639.4
(-0) 		675.7
(0.4) 		550.5
(-1) 		359.8
(-3) 		562
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 415.2
(3)
P 		106.5
(-3)
P 		124.8
(-2.6)
P 		176.5
(-1.6)
P 		309
B 330.9
(3)
P 		119.7
(-2.4)
P 		95.8
(-3)
P 		238.6
(0.6)
P 		235
C 379.9
(3)
P 		186.9
(-2.3)
P 		161.8
(-2.9)
P 		159.7
(-3)
P 		220
avr 375.3
(3) 		137.7
(-2.8) 		127.5
(-3) 		191.6
(-1.4) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 109.3
(-2.4)
P 		254.6
(3)
P 		152.1
(-0.8)
P 		198.6
(0.9)
P 		129.8
(-1.6)
P 		92.3
(-3)
P 		162
B 254.8
(2.6)
P 		195
(-0)
P 		149.7
(-2.1)
P 		149.3
(-2.1)
P 		262.9
(3)
P 		129.1
(-3)
P 		134
C 534.1
(3)
P 		165.6
(-2.3)
P 		153.5
(-2.5)
P 		136.9
(-2.7)
P 		185.8
(-2)
P 		118.5
(-3)
P 		416
avr 299.4
(3) 		205.1
(-0) 		151.8
(-1.8) 		161.6
(-1.4) 		192.8
(-0.4) 		113.3
(-3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9528
Sequence Type Exemplar sequence
Representative Public ID C52D10.11 NCBI
Target Description C52D10.11 /REP_DB=WormBase Gene ID /WP=CE17594 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070650 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-17) (flp-17) mRNA, complete cds. 11/11 None
SNAP00000030650 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17190495:17191847:-1 11/11 None
GENEFINDER00000030663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17190495:17191847:-1 11/11 None
C52D10.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:17190197:17191849:-1 gene:C52D10.11 11/11 None
C52D10.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:17190197:17191847:-1 gene:C52D10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17190500-17191853(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-17
Ensembl C52D10.11
Entrez Gene 178498 Entrez gene
SwissProt Q966N2 EMBL-EBI
WormBase CE17594 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503051 FMRF-Like Peptide family member (flp-17) [Caenorhabditis elegans] gb|AAK77202.1| Fmrf-like peptide protein 17 [Caenorhabditis elegans] 1.0E-59
blast CAE57405 Hypothetical protein CBG00359 [Caenorhabditis briggsae] 4.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.09
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.067
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.014
Sequence
Target Sequence 
>C. ELEGANS:176557_AT
tagtgctcaccacttgtttgttgctcacaatttcgggatcctcccaggccgcttcaatgg
aggaaattcagtcggaaaagttttgcgagaagttcccaacactccacatgtgccgactga
aagaagagctgacaggcagtttggtcgagttacagtatcttttgcaagatggaatcaaca
atcaacagcaagccggagctcaagaggtacaaaagagaaagagcgcctttgtcagattcg
gaaagagatctgctccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTGCTCACCACTTGTTTGTTGCT 686 653 26 Antisense
TGTTGCTCACAATTTCGGGATCCTC 273 563 44 Antisense
TCCTCCCAGGCCGCTTCAATGGAGG 444 561 64 Antisense
TTGCGAGAAGTTCCCAACACTCCAC 442 701 108 Antisense
ACACTCCACATGTGCCGACTGAAAG 223 111 124 Antisense
GAGCTGACAGGCAGTTTGGTCGAGT 465 387 151 Antisense
TGGTCGAGTTACAGTATCTTTTGCA 296 553 167 Antisense
GAATCAACAATCAACAGCAAGCCGG 493 327 197 Antisense
GCAAGCCGGAGCTCAAGAGGTACAA 504 319 213 Antisense
GAAAGAGCGCCTTTGTCAGATTCGG 115 361 242 Antisense
GATTCGGAAAGAGATCTGCTCCAGA 692 431 260 Antisense
Sequence Source Affymetrix Proprietary Database