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[176554_at]

Description Y71G10AL.A /REP_DB=WormBase Gene ID /WP=CE26247 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 93      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 38.6
(0.6)
A 		7.8
(-2.5)
A 		2.7
(-3)
A 		63.3
(3)
A 		61
B 8.3
(-1.8)
A 		27.8
(2.8)
A 		3.1
(-3)
A 		28.8
(3)
P 		26
C 18.7
(2.2)
A 		2.3
(-3)
A 		3.5
(-2.6)
A 		21.1
(3)
A 		19
avr 21.9
(0.3) 		12.6
(-1.4) 		3.1
(-3) 		37.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.7
(-2.3)
A 		11.3
(0)
A 		14.6
(1)
A 		11.2
(-0)
A 		21.3
(3)
A 		1.3
(-3)
A 		20
B 34
(2.2)
A 		5.2
(-2.4)
A 		39.2
(3)
A 		1.7
(-2.9)
A 		34
(2.2)
A 		1.1
(-3)
A 		38
C 7
(-2.3)
A 		30.2
(1)
A 		14.7
(-1.2)
A 		2
(-3)
A 		44.4
(3)
P 		11.2
(-1.7)
A 		42
avr 14.9
(-0.8) 		15.6
(-0.7) 		22.8
(0.8) 		5
(-2.9) 		33.2
(3) 		4.5
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.1
(3)
A 		1.7
(-2.6)
A 		0.7
(-3)
A 		9.3
(0.9)
A 		13
B 2.6
(-1.2)
A 		6.9
(3)
A 		0.7
(-3)
A 		6.1
(2.2)
P 		6
C 6.2
(3)
A 		0.7
(-3)
A 		1.2
(-2.5)
A 		3.6
(0.2)
A 		6
avr 7.6
(3) 		3.1
(-1) 		0.9
(-3) 		6.3
(1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-2.6)
A 		4
(0.6)
A 		3.2
(-0.1)
A 		2.9
(-0.4)
A 		6.4
(3)
A 		0.3
(-3)
A 		6
B 11.8
(2.1)
A 		1.7
(-2.4)
A 		9.5
(1.1)
A 		0.5
(-3)
A 		13.8
(3)
A 		0.4
(-3)
A 		13
C 2.6
(-2.1)
A 		9.2
(0.8)
A 		3.8
(-1.5)
A 		0.4
(-3)
A 		14.4
(3)
P 		3.7
(-1.6)
A 		14
avr 5
(-0.8) 		5
(-0.8) 		5.5
(-0.5) 		1.3
(-3) 		11.5
(3) 		1.5
(-2.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19360
Sequence Type Exemplar sequence
Representative Public ID Y71G10AL.A NCBI
Target Description Y71G10AL.A /REP_DB=WormBase Gene ID /WP=CE26247 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71G10AL.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G10AL.A Y71G10AL.A /REP_DB=WormBase Gene ID /WP=CE26247 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2181127-2182302(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176554_AT
gcttcagtgcctcatccataattgcaacatttcccgggaaaaagagtgtcagttttccgt
gacacgtacgatttccatcggaattgaaacgagtcggaaagttgatttcacacgttgtcg
atttttgaattgtacggtagatgaagacattgttcaaatcggcccacaacaaattatcga
ttatcagctttttctcgtcgcgtggtccttcgcatactgcaaaacatgggttttaaatga
aaatcgaagtgtttttggagctgaagctttaggaaaaaaaaacgatgtatttttggtggt
tttgagagaaaaattgaaattttttgagagaattttaacaaaaattatgatttttttggg
ggtttttaaaaataaaataatcggaattatatgtgtgaaaattgtggattttcacataca
tctccactggaattccggagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCAGTGCCTCATCCATAATTGC 85 305 15 Antisense
CCATAATTGCAACATTTCCCGGGAA 164 271 30 Antisense
TCCGTGACACGTACGATTTCCATCG 586 593 70 Antisense
AGTTGATTTCACACGTTGTCGATTT 381 65 114 Antisense
GAAGACATTGTTCAAATCGGCCCAC 119 339 157 Antisense
CAAATCGGCCCACAACAAATTATCG 600 189 169 Antisense
CGATTATCAGCTTTTTCTCGTCGCG 680 247 192 Antisense
CGTGGTCCTTCGCATACTGCAAAAC 456 245 215 Antisense
GATGTATTTTTGGTGGTTTTGAGAG 82 409 298 Antisense
ATTGTGGATTTTCACATACATCTCC 250 5 415 Antisense
TCTCCACTGGAATTCCGGAGCTCCA 123 611 435 Antisense
Sequence Source Affymetrix Proprietary Database