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[176553_s_at]

Description Y108G3AL.F /REP_DB=WormBase Gene ID /WP=CE26040 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 66      4grp_high_8_8 > 17      6grp_total > 67      4grp_total > 39      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 461.1
(3)
P 		168.2
(-3)
A 		283.7
(-0.6)
P 		276.9
(-0.8)
M 		293
B 392.8
(3)
P 		306
(0.4)
M 		191.8
(-3)
A 		352.6
(1.8)
P 		201
C 455.4
(3)
P 		310.6
(-1.1)
P 		264.7
(-2.4)
P 		245.3
(-3)
A 		210
avr 436.4
(3) 		261.6
(-2.5) 		246.7
(-3) 		291.6
(-1.6) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 234.3
(-3)
A 		339.1
(-0.5)
P 		360.7
(-0)
P 		309.3
(-1.2)
P 		301.8
(-1.4)
P 		489.5
(3)
P 		255
B 431
(0.3)
P 		296.3
(-2.5)
P 		273.3
(-3)
P 		355.5
(-1.3)
P 		346.2
(-1.5)
P 		560.5
(3)
P 		287
C 306.4
(-2.3)
P 		357.4
(-1.4)
P 		284.5
(-2.8)
M 		442.3
(0.2)
P 		271.9
(-3)
P 		589.8
(3)
P 		318
avr 323.9
(-2.6) 		330.9
(-2.4) 		306.2
(-3) 		369
(-1.4) 		306.6
(-3) 		546.6
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 167.9
(3)
P 		36.5
(-3)
A 		74.2
(-1.3)
P 		40.5
(-2.8)
M 		131
B 125.2
(3)
P 		75.6
(-0.7)
M 		44.5
(-3)
A 		75.1
(-0.7)
P 		81
C 150.7
(3)
P 		89.3
(-0.4)
P 		92.3
(-0.2)
P 		41.4
(-3)
A 		109
avr 147.9
(3) 		67.1
(-2.1) 		70.3
(-1.9) 		52.3
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 43.2
(-3)
A 		120.6
(3)
P 		78.6
(-0.3)
P 		78.5
(-0.3)
P 		91.1
(0.7)
P 		119.2
(2.9)
P 		77
B 150
(0.5)
P 		98.6
(-1.6)
P 		66.4
(-3)
P 		94.1
(-1.8)
P 		140.7
(0.1)
P 		209
(3)
P 		143
C 113.6
(-1)
P 		109.1
(-1.2)
P 		72.4
(-3)
M 		88.9
(-2.2)
P 		88
(-2.3)
P 		197.4
(3)
P 		125
avr 102.3
(-1.3) 		109.4
(-0.8) 		72.5
(-3) 		87.2
(-2.1) 		106.6
(-1) 		175.2
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176553_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19519
Sequence Type Exemplar sequence
Representative Public ID Y108G3AL.F NCBI
Target Description Y108G3AL.F /REP_DB=WormBase Gene ID /WP=CE26040 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070747 NCBI Caenorhabditis elegans Y108G3AL.2 (Y108G3AL.2) mRNA, complete cds. 11/11 None
SNAP00000023639 ENSEMBL cdna:SNAP chromosome:CEL140:V:166822:171163:1 11/11 None
GENEFINDER00000023662 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:167304:172893:1 11/11 None
Y108G3AL.2 ENSEMBL cdna:known chromosome:CEL140:V:166822:176590:1 gene:Y108G3AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:166821-171179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y108G3AL.2
Entrez Gene 178546 Entrez gene
SwissProt Q95Y35 EMBL-EBI
WormBase CE26040 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249611_AT pre-mRNA splicing factor PRP38 family protein (SRL1) at
CANINE:1605732_AT similar to PRP38 pre-mRNA processing factor 38 (yeast) domain containing B cfa
CANINE_2:CFA.16422.1.S1_AT similar to PRP38 pre-mRNA processing factor 38 (yeast) domain containing B cfa
CANINE_2:CFA.2418.1.S1_AT similar to PRP38 pre-mRNA processing factor 38 (yeast) domain containing B cfa
CANINE_2:CFAAFFX.30501.1.S1_AT similar to PRP38 pre-mRNA processing factor 38 (yeast) domain containing B cfa
DROSOPHILA_2:1635704_AT dm
DROSGENOME1:153280_AT dm
HU35KSUBA:RC_AA233711_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HU35KSUBA:RC_AA286911_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HU35KSUBC:RC_R32124_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HU35KSUBC:RC_H97255_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HU35KSUBD:RC_AA280036_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U133A:218040_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U133_PLUS_2:218040_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U133A_2:218040_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
U133_X3P:G8922357_3P_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
U133_X3P:HS.17517.0.A1_3P_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U133_PLUS_2:230270_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U133B:230270_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95C:49269_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95C:55881_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95B:58399_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95C:62119_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95D:80841_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95E:83236_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95D:80633_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
HG-U95E:91908_S_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B hs
MG-U74BV2:112826_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MU11KSUBB:W34585_S_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MG-U74AV2:97919_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MG-U74BV2:115601_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOE430A:1452869_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOUSE430A_2:1452869_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOUSE430_2:1452869_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOE430A:1428674_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOUSE430A_2:1428674_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOUSE430_2:1428674_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOE430B:1455016_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOUSE430_2:1455016_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B mm
MOE430B:1456506_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (Prpf38b), mRNA mm
MOUSE430_2:1456506_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (Prpf38b), mRNA mm
MG-U74BV2:112825_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (Prpf38b), mRNA mm
MU19KSUBA:TC19557_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (Prpf38b), mRNA mm
MU19KSUBA:TC21145_AT PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (Prpf38b), mRNA mm
RAT230_2:1374500_AT similar to sarcoma antigen NY-SAR-27 rn
RAE230A:1374500_AT similar to sarcoma antigen NY-SAR-27 rn
RG-U34B:RC_AI011571_AT similar to sarcoma antigen NY-SAR-27 rn
RAE230B:1379691_AT similar to sarcoma antigen NY-SAR-27 rn
RAT230_2:1379691_AT similar to sarcoma antigen NY-SAR-27 rn
RAE230B:1385455_AT similar to sarcoma antigen NY-SAR-27 rn
RAT230_2:1385455_AT similar to sarcoma antigen NY-SAR-27 rn
RG-U34C:RC_AI237090_AT Similar to sarcoma antigen NY-SAR-27 rn
Protein Similarities
Method ID Description E-Value
blast AAK72068 Hypothetical protein Y108G3AL.2 [Caenorhabditis elegans] ref|NP_503148.1| Y108G3AL.2 [Caenorhabditis elegans] 1.0E-127
blast AAK72068 Hypothetical protein Y108G3AL.2 [Caenorhabditis elegans] ref|NP_503148.1| Y108G3AL.2 [Caenorhabditis elegans] 1.0E-108
blast CAE62357 Hypothetical protein CBG06437 [Caenorhabditis briggsae] 1.0E-102
blast CAE62357 Hypothetical protein CBG06437 [Caenorhabditis briggsae] 3.0E-93
blast AAK72068 Hypothetical protein Y108G3AL.2 [Caenorhabditis elegans] ref|NP_503148.1| Y108G3AL.2 [Caenorhabditis elegans] 5.0E-76
blast CAE62357 Hypothetical protein CBG06437 [Caenorhabditis briggsae] 1.0E-62
blast XP_624239 PREDICTED: similar to GA14052-PA [Apis mellifera] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR005037 EMBL-EBI PRP38 family 6.1E-69
Pfam IPR005037 EMBL-EBI PRP38 family 1.1E-54
Pfam IPR005037 EMBL-EBI PRP38 family 2.6E-69
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503148.1 1 122-144
Y108G3AL.2 1 122-144
SNAP00000023639 1 69-91
GENEFINDER00000023662 1 111-133
Sequence
Target Sequence 
>C. ELEGANS:176553_S_AT
gaggagtccgtggagttggagctggaggtgtcgtcagttcagcctactgccttctctaca
gactattcaatttgaaaatctcgagaaaacagctgattagtatgctcaatagcagacaat
cggtttatattcgaggcctcggcttcatgtacattcgttacacccaaccaccagctgacc
tctggtattggctggaaccctatttggatgatgatcgggaaatcgatccgagatctggtg
gaggtgatctaatgacttttgggcagctcgttcggacaatgatcaataaattggattggt
acggtactctattcccaagaattccggttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAGTCCGTGGAGTTGGAGCTGG 25 405 377 Antisense
GCTGGAGGTGTCGTCAGTTCAGCCT 70 295 397 Antisense
CTACTGCCTTCTCTACAGACTATTC 676 225 420 Antisense
CCTCGGCTTCATGTACATTCGTTAC 462 267 513 Antisense
CATGTACATTCGTTACACCCAACCA 278 209 522 Antisense
CAACCACCAGCTGACCTCTGGTATT 595 185 541 Antisense
GTATTGGCTGGAACCCTATTTGGAT 635 451 561 Antisense
GATCTAATGACTTTTGGGCAGCTCG 542 419 622 Antisense
TGGGCAGCTCGTTCGGACAATGATC 518 553 636 Antisense
GGATTGGTACGGTACTCTATTCCCA 425 507 669 Antisense
TATTCCCAAGAATTCCGGTTCCAAT 289 663 686 Antisense
Sequence Source Affymetrix Proprietary Database