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[176552_at]

Description Y39H10A.2 /REP_DB=WormBase Gene ID /WP=CE21778 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1090
1 2 3 4 range
A 5.8
(-3)
A 		32.8
(-2.8)
A 		8.5
(-3)
A 		1059
(3)
P 		1053
B 23.9
(-2.9)
A 		4
(-3)
A 		73.8
(-2.6)
A 		1091.4
(3)
P 		1087
C 13
(-2.9)
A 		3.5
(-3)
A 		1.3
(-3)
A 		980.1
(3)
P 		979
avr 14.2
(-3) 		13.4
(-3) 		27.9
(-2.9) 		1043.5
(3) 		1030

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 43.1
(-2.3)
A 		14.2
(-2.8)
A 		1.9
(-3)
A 		2.3
(-3)
A 		99.2
(-1.4)
P 		373.7
(3)
P 		372
B 6.5
(-2.9)
A 		41.3
(-2.4)
A 		14.1
(-2.8)
A 		2.4
(-3)
A 		105.8
(-1.3)
P 		378.1
(3)
P 		376
C 40
(-2.5)
A 		40.6
(-2.5)
A 		9.6
(-3)
A 		28.9
(-2.7)
A 		116
(-1.2)
P 		372.1
(3)
P 		363
avr 29.9
(-2.6) 		32
(-2.6) 		8.5
(-3) 		11.2
(-3) 		107
(-1.4) 		374.6
(3) 		366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 2.1
(-3)
A 		7.1
(-2.8)
A 		2.2
(-3)
A 		155
(3)
P 		153
B 7.6
(-2.8)
A 		1
(-3)
A 		17.1
(-2.6)
A 		232.6
(3)
P 		232
C 4.3
(-2.9)
A 		1
(-3)
A 		0.5
(-3)
A 		165.3
(3)
P 		165
avr 4.7
(-2.9) 		3
(-3) 		6.6
(-2.9) 		184.3
(3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 7.9
(-2.5)
A 		5
(-2.7)
A 		0.4
(-3)
A 		0.6
(-3)
A 		29.9
(-1)
P 		91
(3)
P 		91
B 2.3
(-2.9)
A 		13.7
(-2.4)
A 		3.4
(-2.9)
A 		0.6
(-3)
A 		43
(-1.2)
P 		141
(3)
P 		140
C 14.8
(-2.4)
A 		12.4
(-2.5)
A 		2.4
(-3)
A 		5.8
(-2.8)
A 		37.5
(-1.3)
P 		124.5
(3)
P 		122
avr 8.3
(-2.7) 		10.4
(-2.6) 		2.1
(-3) 		2.3
(-3) 		36.8
(-1.2) 		118.8
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15396
Sequence Type Exemplar sequence
Representative Public ID Y39H10A.2 NCBI
Target Description Y39H10A.2 /REP_DB=WormBase Gene ID /WP=CE21778 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071640 NCBI Caenorhabditis elegans Y39H10A.2 (Y39H10A.2) mRNA, complete cds. 11/11 None
SNAP00000040121 ENSEMBL cdna:SNAP chromosome:CEL140:V:3758503:3766120:1 9/11 None
GENEFINDER00000040123 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3760962:3766120:1 11/11 None
Y39H10A.2 ENSEMBL cdna:known chromosome:CEL140:V:3760953:3766120:1 gene:Y39H10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3760952-3766120(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39H10A.2
Entrez Gene 178792 Entrez gene
SwissProt Q9N3Z2 EMBL-EBI
WormBase CE21778 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59486 Hypothetical protein Y39H10A.2 [Caenorhabditis elegans] ref|NP_504041.1| Y39H10A.2 [Caenorhabditis elegans] 0.0
blast CAE58006 Hypothetical protein CBG01075 [Caenorhabditis briggsae] 0.0
blast AAC48228 Temporarily assigned gene name protein 40 [Caenorhabditis elegans] ref|NP_503163.2| Temporarily Assigned Gene name family member (tag-40) [Caenorhabditis elegans] 1.0E-167
blast AAF59486 Hypothetical protein Y39H10A.2 [Caenorhabditis elegans] ref|NP_504041.1| Y39H10A.2 [Caenorhabditis elegans] 1.0E-159
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504041.1 11 233-255,308-330,345-367,396-415,435-457,470-492,530-552,564-583,598-620,633-655,670-692
Y39H10A.2 11 233-255,308-330,345-367,396-415,435-457,470-492,530-552,564-583,598-620,633-655,670-692
SNAP00000040121 7 189-208,228-250,279-298,354-376,410-429,444-466,479-501
GENEFINDER00000040123 11 230-252,305-327,342-364,393-412,432-454,467-489,527-549,561-580,595-617,630-652,667-689
Sequence
Target Sequence 
>C. ELEGANS:176552_AT
ggtactgggatatttcatgcggcgaattccaaaaatcaacataaacccttgggtcgatcg
aataatgtggtgcttatccttaggatccatgattttcgttattgtaattatggaagacta
tacatctggccacctctggtccccactccaaacggctttgtacagctgcttcagccgagt
tgtctggggactcgcgttgtcctggattgtgatctccacctattaccgcaagggattaat
caataaattcatgagcctcccggtgtggacaccactggctcggctatcattttgtgctta
cctagttcatctgatggtcgctgcctactttttcggacgaaatcattcggaactttattt
ttcgactctaccgtactttgtattagtaattgcaattcctgtcatctcgtgctcattcct
tgtcgcaatattttggtcgacaatgttcgaacttccgtttgccaaggttgaagcattgct
tcttggtggtggaagtcgatcatcggcaccggatatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACTGGGATATTTCATGCGGCGA 305 503 1653 Antisense
AAACGGCTTTGTACAGCTGCTTCAG 566 127 1802 Antisense
TGCTTCAGCCGAGTTGTCTGGGGAC 363 577 1819 Antisense
GTTGTCCTGGATTGTGATCTCCACC 612 437 1848 Antisense
ATCTCCACCTATTACCGCAAGGGAT 692 31 1864 Antisense
GGCTCGGCTATCATTTTGTGCTTAC 420 539 1929 Antisense
TTGTGCTTACCTAGTTCATCTGATG 317 705 1944 Antisense
TATTTTTCGACTCTACCGTACTTTG 703 655 2008 Antisense
GTAATTGCAATTCCTGTCATCTCGT 475 463 2038 Antisense
GACAATGTTCGAACTTCCGTTTGCC 540 363 2091 Antisense
GTCGATCATCGGCACCGGATATCCC 266 473 2147 Antisense
Sequence Source Affymetrix Proprietary Database