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[176550_at]

Description Y108G3AL.D /REP_DB=WormBase Gene ID /WP=CE26038 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 03      6grp_total > 03      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 148.1
(-2.3)
P 		132.7
(-3)
P 		170.4
(-1.3)
A 		266.2
(3)
P 		134
B 167.7
(0.9)
P 		70.5
(-3)
A 		111.8
(-1.3)
A 		218.2
(3)
P 		148
C 202.1
(3)
P 		88.7
(-3)
P 		140.6
(-0.3)
P 		183.4
(2)
P 		113
avr 172.6
(0.6) 		97.3
(-3) 		140.9
(-0.9) 		222.6
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 208.3
(3)
P 		133.1
(-0)
P 		86.4
(-1.9)
P 		121.3
(-0.5)
M 		93.5
(-1.6)
P 		59.7
(-3)
A 		149
B 201.9
(2.5)
P 		212.4
(3)
P 		91.6
(-2.6)
P 		132.7
(-0.7)
A 		131.7
(-0.8)
P 		83.5
(-3)
P 		129
C 128.6
(-0)
P 		191.2
(3)
P 		150.3
(1)
P 		165
(1.7)
P 		111.6
(-0.9)
P 		67.7
(-3)
P 		124
avr 179.6
(3) 		178.9
(3) 		109.4
(-0.9) 		139.7
(0.8) 		112.3
(-0.7) 		70.3
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 53.9
(3)
P 		28.8
(-3)
P 		44.6
(0.8)
A 		39
(-0.6)
P 		25
B 53.5
(3)
P 		17.4
(-3)
A 		25.9
(-1.6)
A 		46.5
(1.8)
P 		36
C 66.9
(3)
P 		25.5
(-3)
P 		49
(0.4)
P 		30.9
(-2.2)
P 		41
avr 58.1
(3) 		23.9
(-3) 		39.8
(-0.2) 		38.8
(-0.4) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 38.4
(1.4)
P 		47.3
(3)
P 		18.8
(-2.2)
P 		30.8
(-0)
M 		28.2
(-0.5)
P 		14.5
(-3)
A 		33
B 70.3
(3)
P 		70.7
(3)
P 		22.2
(-3)
P 		35.2
(-1.4)
A 		53.5
(0.9)
P 		31.1
(-1.9)
P 		49
C 47.7
(1.2)
P 		58.3
(3)
P 		38.2
(-0.4)
P 		33.2
(-1.2)
P 		36.1
(-0.7)
P 		22.7
(-3)
P 		36
avr 52.1
(1.9) 		58.8
(3) 		26.4
(-2.4) 		33.1
(-1.3) 		39.3
(-0.3) 		22.8
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19471
Sequence Type Exemplar sequence
Representative Public ID Y108G3AL.D NCBI
Target Description Y108G3AL.D /REP_DB=WormBase Gene ID /WP=CE26038 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070746 NCBI Caenorhabditis elegans Y108G3AL.3 (Y108G3AL.3) mRNA, complete cds. 11/11 None
SNAP00000023638 ENSEMBL cdna:SNAP chromosome:CEL140:V:163716:172032:-1 11/11 None
GENEFINDER00000023663 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:163716:166611:-1 11/11 None
Y108G3AL.3 ENSEMBL cdna:known chromosome:CEL140:V:163670:172039:-1 gene:Y108G3AL.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:163715-165854(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y108G3AL.3
Entrez Gene 190931 Entrez gene
SwissProt Q95Y36 EMBL-EBI
WormBase CE29094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00859 Hypothetical protein Y108G3AL.3 [Caenorhabditis elegans] ref|NP_503147.1| Y108G3AL.3 [Caenorhabditis elegans] 0.0
blast CAE62358 Hypothetical protein CBG06438 [Caenorhabditis briggsae] 1.0E-165
blast CAE62356 Hypothetical protein CBG06436 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:176550_AT
accgcccagcagaaaggcagccggaggatcccacgagccccgtgcaaaaactccaaatca
gaagaataaagacgagagaccaacaacgcgtcgttcttcggttgacaagaacgcgccgaa
gagaaacgacagtgttccacgtgagagaaagagttctgtatcccatgatgaatcgaagcc
gcccaaaccgataggacctctgcggggcaacaagtacgacggagatgttgtgctcgggcg
agcagagtcgcctgggatagatcatgggccgagaaggaaaaatttgaacgatgttaattc
ccatttggtagatacgaaccgtctcaatagctccgacgttcgagttcgtgctcaatatct
tcgagagcagcgcgacaagcttcttcaaatgaaaaatgcggaacgcatcaagcaaatgac
tgatatccaacaaaatgcgtctctggaacgtccaaagacagcggcacgtgcccgtgagat
tctggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGCCCAGCAGAAAGGCAGCCGGA 101 89 1116 Antisense
CCAACAACGCGTCGTTCTTCGGTTG 202 277 1195 Antisense
TCCCATGATGAATCGAAGCCGCCCA 411 595 1276 Antisense
GCCCAAACCGATAGGACCTCTGCGG 565 285 1296 Antisense
ACGACGGAGATGTTGTGCTCGGGCG 177 93 1331 Antisense
GATACGAACCGTCTCAATAGCTCCG 275 423 1426 Antisense
CAATAGCTCCGACGTTCGAGTTCGT 193 181 1440 Antisense
GAGTTCGTGCTCAATATCTTCGAGA 169 399 1457 Antisense
AGCAGCGCGACAAGCTTCTTCAAAT 212 77 1481 Antisense
AAAATGCGTCTCTGGAACGTCCAAA 111 129 1547 Antisense
CACGTGCCCGTGAGATTCTGGATAA 429 199 1580 Antisense
Sequence Source Affymetrix Proprietary Database