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[176548_s_at]

Description C35D10.7B /REP_DB=WormBase Gene ID /WP=CE26431 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 48      6grp_total > 97      4grp_total > 63      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 133.9
(-1.2)
P 		125
(-3)
A 		154.4
(3)
P 		131.7
(-1.6)
A 		29
B 160.5
(3)
M 		109.4
(-1.6)
A 		93.9
(-3)
P 		98
(-2.6)
A 		67
C 167.5
(3)
P 		110.1
(-3)
P 		135
(-0.4)
P 		114.4
(-2.6)
P 		57
avr 154
(3) 		114.8
(-3) 		127.8
(-1) 		114.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 130.4
(-3)
M 		167.9
(-1.8)
P 		148
(-2.4)
P 		156.4
(-2.1)
P 		239.1
(0.6)
P 		313.3
(3)
P 		183
B 186.8
(-0.7)
P 		142.3
(-3)
P 		161.1
(-2)
P 		213.8
(0.7)
P 		257.2
(3)
P 		257.6
(3)
P 		115
C 159.5
(-1.7)
P 		122.7
(-3)
P 		171
(-1.4)
P 		197.3
(-0.5)
P 		274.6
(2.2)
P 		298.8
(3)
P 		176
avr 158.9
(-2.4) 		144.3
(-3) 		160
(-2.4) 		189.2
(-1.1) 		257
(1.6) 		289.9
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 48.8
(3)
P 		27.1
(-1.4)
A 		40.4
(1.3)
P 		19.3
(-3)
A 		30
B 51.2
(3)
M 		27
(-1.8)
A 		21.8
(-2.8)
P 		20.9
(-3)
A 		30
C 55.5
(3)
P 		31.7
(-0.9)
P 		47.1
(1.6)
P 		19.3
(-3)
P 		36
avr 51.8
(3) 		28.6
(-1.4) 		36.4
(0.1) 		19.8
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 24
(-3)
M 		59.7
(1.1)
P 		32.2
(-2.1)
P 		39.7
(-1.2)
P 		72.1
(2.5)
P 		76.3
(3)
P 		52
B 65
(-0.6)
P 		47.4
(-2.2)
P 		39.1
(-3)
P 		56.6
(-1.4)
P 		104.5
(3)
P 		96.1
(2.2)
P 		65
C 59.1
(-0.9)
P 		37.4
(-3)
P 		43.5
(-2.4)
P 		39.7
(-2.8)
P 		88.8
(1.9)
P 		100
(3)
P 		63
avr 49.4
(-1.7) 		48.2
(-1.9) 		38.3
(-3) 		45.3
(-2.2) 		88.5
(2.7) 		90.8
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6758
Sequence Type Exemplar sequence
Representative Public ID C35D10.7B NCBI
Target Description C35D10.7B /REP_DB=WormBase Gene ID /WP=CE26431 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065608(10), NM_065609(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065608 NCBI Caenorhabditis elegans C35D10.7a (C35D10.7) mRNA, complete cds. 10/11 A 
NM_065609 NCBI Caenorhabditis elegans C35D10.7b (C35D10.7) mRNA, complete cds. 10/11 A 
GENEFINDER00000029570 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4852286:4860647:1 10/11 None
SNAP00000029543 ENSEMBL cdna:SNAP chromosome:CEL140:III:4856164:4860647:1 11/11 None
C35D10.7a ENSEMBL cdna:known chromosome:CEL140:III:4856154:4859190:1 gene:C35D10.7 10/11 A 
C35D10.7b ENSEMBL cdna:known chromosome:CEL140:III:4856820:4859098:1 gene:C35D10.7 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4856163-4858142(+) 100.0 100.0
Public Domain and Genome References
Ensembl C35D10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498009 C35D10.7a [Caenorhabditis elegans] gb|AAN63435.1| Hypothetical protein C35D10.7a [Caenorhabditis elegans] 0.0
blast NP_498010 C35D10.7b [Caenorhabditis elegans] gb|AAN63436.1| Hypothetical protein C35D10.7b [Caenorhabditis elegans] 0.0
blast S72568 hypothetical protein C35D10.7 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002182 EMBL-EBI NB-ARC domain 1.1E-38
Pfam IPR002182 EMBL-EBI NB-ARC domain 2.9E-87
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.1E-110
Pfam IPR001315 EMBL-EBI CARD interaction domain 8.6E-24
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 4.1E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029570 6 552-574,587-609,614-636,787-809,1360-1379,1386-1408
Sequence
Target Sequence 
>C. ELEGANS:176548_S_AT
ggcgaagctcgtagcaataccaccaatgaaagctagaaacaggaggtcttcacgcaatag
cttggtgtacatagatggtccttctacttctgaaagtcattcttcaatggttcaacaagt
tcccatcatcgacaacattcccgaagtgctcgaaaatgagacagctgtctgttccatttc
tagtgaagcagatcataattcgagaggaatcaaagataatcaagaatttgcaattgaaat
cagtggggaagtgtctcgaaccgacgacatttgtgatgactttgccgtgttcctcaaaaa
atgcacagtactattgacgaaatttattgactcctactatgatttccgttcaactatgaa
acttaagccagaagatgccattgagcactggagtgctgaacgtttgaccaaagaggaaca
cgccgcgaggtcacaagattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGAAGCTCGTAGCAATACCACCA 61 543 594 Antisense
GGAGGTCTTCACGCAATAGCTTGGT 339 515 635 Antisense
GATGGTCCTTCTACTTCTGAAAGTC 698 407 667 Antisense
AAGTTCCCATCATCGACAACATTCC 281 157 710 Antisense
GACAACATTCCCGAAGTGCTCGAAA 30 367 724 Antisense
AGCTGTCTGTTCCATTTCTAGTGAA 480 81 756 Antisense
TGGGGAAGTGTCTCGAACCGACGAC 25 535 837 Antisense
ATTTGTGATGACTTTGCCGTGTTCC 76 19 862 Antisense
TTGACTCCTACTATGATTTCCGTTC 303 685 920 Antisense
GCACTGGAGTGCTGAACGTTTGACC 272 311 978 Antisense
AACACGCCGCGAGGTCACAAGATTT 243 131 1010 Antisense
Sequence Source Affymetrix Proprietary Database