[Home] | [Total List]

[176546_at]

Description Y71G12B.HH /REP_DB=WormBase Gene ID /WP=CE26254 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 92      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 7.4
(-3)
A 		7.5
(-3)
A 		6.5
(-3)
A 		176.3
(3)
P 		170
B 39.4
(3)
A 		6.5
(-2.9)
A 		6.2
(-3)
A 		26.3
(0.6)
A 		33
C 4.8
(-3)
A 		5.3
(-2.9)
A 		3.5
(-3)
A 		215.2
(3)
P 		212
avr 17.2
(-2.5) 		6.4
(-3) 		5.4
(-3) 		139.3
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.5
(-2.9)
A 		5.9
(-2.4)
A 		25.3
(1.5)
A 		13.1
(-1)
A 		32.8
(3)
A 		3.1
(-3)
A 		30
B 2.9
(-3)
A 		9.7
(-1.3)
A 		5.9
(-2.2)
A 		5.3
(-2.4)
A 		26.7
(3)
A 		3.7
(-2.8)
A 		24
C 13.9
(-0.7)
A 		31
(3)
A 		5.1
(-2.6)
A 		25.3
(1.8)
A 		3.3
(-3)
A 		5.9
(-2.4)
A 		28
avr 6.8
(-2.1) 		15.5
(1.1) 		12.1
(-0.2) 		14.6
(0.7) 		20.9
(3) 		4.2
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 2.7
(-2.7)
A 		1.6
(-3)
A 		1.7
(-3)
A 		25.8
(3)
P 		24
B 12.6
(3)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		5.6
(-0.8)
A 		11
C 1.6
(-2.9)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		36.3
(3)
P 		35
avr 5.6
(-1.8) 		1.6
(-2.9) 		1.4
(-3) 		22.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.1
(-2)
A 		5.5
(0.2)
A 		3.3
(-1.3)
A 		9.9
(3)
A 		0.8
(-2.9)
A 		9
B 1
(-3)
A 		3.2
(-1.7)
A 		1.4
(-2.8)
A 		1.4
(-2.8)
A 		10.9
(3)
A 		1.4
(-2.8)
A 		10
C 5.1
(-0.1)
A 		9.4
(3)
A 		1.3
(-2.9)
A 		5.1
(-0.1)
A 		1.1
(-3)
A 		2
(-2.3)
A 		8
avr 2.2
(-2.2) 		4.9
(0.6) 		2.7
(-1.7) 		3.3
(-1.1) 		7.3
(3) 		1.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18657
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.HH NCBI
Target Description Y71G12B.HH /REP_DB=WormBase Gene ID /WP=CE26254 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058502
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001805 ENSEMBL cdna:SNAP chromosome:CEL140:I:1828080:1832063:1 None
NM_058502 NCBI Caenorhabditis elegans Y71G12B.28 (Y71G12B.28) mRNA, complete cds. None
Y71G12B.28 ENSEMBL cdna:known chromosome:CEL140:I:1829771:1832063:1 gene:Y71G12B.28 None
GENEFINDER00000001818 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1828080:1832063:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1823446-1832063(+) 94.45 96.54
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.28
Entrez Gene 171748 Entrez gene
SwissProt Q95XL7 EMBL-EBI
WormBase CE28859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27267 Hypothetical protein Y71G12B.1a [Caenorhabditis elegans] ref|NP_490901.2| Y71G12B.1a [Caenorhabditis elegans] 2.0E-23
blast AAL27268 Hypothetical protein Y71G12B.1b [Caenorhabditis elegans] ref|NP_490902.2| Y71G12B.1b [Caenorhabditis elegans] 2.0E-23
blast AAL27267 Hypothetical protein Y71G12B.1a [Caenorhabditis elegans] ref|NP_490901.2| Y71G12B.1a [Caenorhabditis elegans] 6.0E-23
blast AAL27268 Hypothetical protein Y71G12B.1b [Caenorhabditis elegans] ref|NP_490902.2| Y71G12B.1b [Caenorhabditis elegans] 6.0E-23
blast AAK84624 Hypothetical protein Y71G12B.28 [Caenorhabditis elegans] ref|NP_490903.1| Y71G12B.28 [Caenorhabditis elegans] 5.0E-21
blast AAK84624 Hypothetical protein Y71G12B.28 [Caenorhabditis elegans] ref|NP_490903.1| Y71G12B.28 [Caenorhabditis elegans] 8.0E-21
blast AAK84624 Hypothetical protein Y71G12B.28 [Caenorhabditis elegans] ref|NP_490903.1| Y71G12B.28 [Caenorhabditis elegans] 2.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001805 2 29-51,58-80
GENEFINDER00000001818 3 62-84,94-116,141-163
Sequence
Target Sequence 
>C. ELEGANS:176546_AT
cggatgatgcaggagatcccccaacaactgctgcaaaagaagtttcttataaggaacact
tccgcatatggttccatgatgtgatggttgaattgacaccaccatctgcagaagaattgt
acaatgggcctgatctgccgtggaatcaaatttggaaaaaatttggagtggaattcttcg
ttattgtcggcctagtgatcgtctcagcatcttttatttttgctgaaggtgtgaaatatc
ttcaaacattccttgttgtctacgtagtctacatacttttcaacattgtacatgggctct
acgttattgccgtgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATGATGCAGGAGATCCCCCAAC 590 243 1613 Antisense
ACACTTCCGCATATGGTTCCATGAT 307 111 1668 Antisense
TTGAATTGACACCACCATCTGCAGA 654 703 1700 Antisense
TACAATGGGCCTGATCTGCCGTGGA 145 643 1732 Antisense
GTGGAATTCTTCGTTATTGTCGGCC 189 491 1780 Antisense
TATTGTCGGCCTAGTGATCGTCTCA 645 665 1794 Antisense
GATCGTCTCAGCATCTTTTATTTTT 10 419 1809 Antisense
CATTCCTTGTTGTCTACGTAGTCTA 480 217 1859 Antisense
ACGTAGTCTACATACTTTTCAACAT 261 93 1874 Antisense
TCAACATTGTACATGGGCTCTACGT 624 629 1892 Antisense
GGGCTCTACGTTATTGCCGTGACTC 402 493 1906 Antisense
Sequence Source Affymetrix Proprietary Database