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[176545_at]

Description Y39H10A.4 /REP_DB=WormBase Gene ID /WP=CE21781 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 80.7
(-3)
A 		216.8
(3)
A 		205.8
(2.5)
A 		82.7
(-2.9)
A 		136
B 69.8
(-2.7)
A 		210.5
(3)
A 		176
(1.6)
A 		61.7
(-3)
A 		149
C 123.5
(-3)
A 		224.3
(3)
A 		170.2
(-0.2)
A 		132.6
(-2.5)
A 		101
avr 91.3
(-3) 		217.2
(3) 		184
(1.4) 		92.3
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 199.6
(3)
A 		98.3
(-1.1)
A 		52.9
(-3)
A 		77.4
(-2)
A 		114.1
(-0.5)
A 		76.3
(-2)
A 		147
B 109.7
(2.7)
A 		106.7
(2.4)
A 		92.7
(1)
A 		113
(3)
A 		85.2
(0.3)
A 		51.6
(-3)
A 		61
C 145.7
(2)
A 		135.1
(1.3)
A 		160.8
(3)
A 		148.9
(2.2)
A 		82.9
(-2.1)
A 		69.2
(-3)
A 		92
avr 151.7
(3) 		113.4
(0.3) 		102.1
(-0.5) 		113.1
(0.3) 		94.1
(-1) 		65.7
(-3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 29.4
(-0.5)
A 		47.1
(2)
A 		53.8
(3)
A 		12.1
(-3)
A 		42
B 22.3
(-1.6)
A 		52
(3)
A 		40.8
(1.3)
A 		13.2
(-3)
A 		39
C 40.9
(-0.4)
A 		64.5
(3)
A 		59.3
(2.3)
A 		22.4
(-3)
A 		42
avr 30.9
(-0.7) 		54.5
(3) 		51.3
(2.5) 		15.9
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 36.8
(3)
A 		35
(2.6)
A 		11.5
(-3)
A 		19.6
(-1.1)
A 		34.4
(2.4)
A 		18.6
(-1.3)
A 		25
B 38.2
(3)
A 		35.5
(2.1)
A 		22.5
(-2)
A 		29.9
(0.4)
A 		34.6
(1.9)
A 		19.3
(-3)
A 		19
C 54
(3)
A 		41.2
(0.5)
A 		40.9
(0.4)
A 		29.9
(-1.7)
A 		26.8
(-2.3)
A 		23.2
(-3)
A 		31
avr 43
(3) 		37.2
(1.5) 		25
(-1.8) 		26.5
(-1.4) 		31.9
(0.1) 		20.4
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14831
Sequence Type Exemplar sequence
Representative Public ID Y39H10A.4 NCBI
Target Description Y39H10A.4 /REP_DB=WormBase Gene ID /WP=CE21781 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071635 NCBI Caenorhabditis elegans Y39H10A.4 (Y39H10A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040125 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3732958:3739207:-1 11/11 None
Y39H10A.4 ENSEMBL cdna:known chromosome:CEL140:V:3732958:3735681:-1 gene:Y39H10A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040115 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3732957-3735681(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39H10A.4
Entrez Gene 189774 Entrez gene
SwissProt Q9N3Z9 EMBL-EBI
WormBase CE21781 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59482 Hypothetical protein Y39H10A.4 [Caenorhabditis elegans] ref|NP_504036.1| Y39H10A.4 [Caenorhabditis elegans] 1.0E-150
blast AAF59482 Hypothetical protein Y39H10A.4 [Caenorhabditis elegans] ref|NP_504036.1| Y39H10A.4 [Caenorhabditis elegans] 1.0E-132
blast CAE62557 Hypothetical protein CBG06667 [Caenorhabditis briggsae] 1.0E-115
blast AAF59481 Hypothetical protein Y39H10A.5 [Caenorhabditis elegans] ref|NP_504037.1| Y39H10A.5 [Caenorhabditis elegans] 8.0E-23
Sequence
Target Sequence 
>C. ELEGANS:176545_AT
gaacctcaaccaacagcttttgcatacgttttcgagtattccacgatttctacagagccg
gataattggaattttgcgggcgcctcttcgaaaccggaagccactttcagcattctcgac
ccatgccgtgattaccaatttcgtgtcattattgtcattcgaagttcgaatccggcggcc
gtatttgacataattcgcccacgaccgattccagttcaattgcctccgtttatactcaca
caaccacagatttccatagaaatgccacgtgtgaacaatttcaacgcatctggcgacctg
aagctctacgtaaagtggtccctaccctatggctacatagacggtgacatctatagctac
gagtctccagctctgtacccgattcagtgtagtactcctgaaggtgaaatcccgactccg
cgaattgaaattgtgaaaggcggcgggcggctggcggtttggcttccgccatcagtcctg
gaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCTCAACCAACAGCTTTTGCAT 343 345 181 Antisense
TAATTGGAATTTTGCGGGCGCCTCT 627 631 243 Antisense
GACCCATGCCGTGATTACCAATTTC 282 381 298 Antisense
GTATTTGACATAATTCGCCCACGAC 356 453 361 Antisense
AGTTCAATTGCCTCCGTTTATACTC 19 63 393 Antisense
CTCACACAACCACAGATTTCCATAG 32 229 415 Antisense
TCAACGCATCTGGCGACCTGAAGCT 364 631 461 Antisense
TACGTAAAGTGGTCCCTACCCTATG 49 641 487 Antisense
TATAGCTACGAGTCTCCAGCTCTGT 53 659 532 Antisense
CAGCTCTGTACCCGATTCAGTGTAG 289 203 548 Antisense
GGCTTCCGCCATCAGTCCTGGAAGC 490 535 641 Antisense
Sequence Source Affymetrix Proprietary Database