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[176543_at]

Description Y71D11A.1 /REP_DB=WormBase Gene ID /WP=CE26243 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 26.3
(-3)
A 		78.4
(3)
A 		42
(-1.2)
A 		48.3
(-0.5)
A 		52
B 29.9
(-3)
A 		74.3
(3)
P 		38.7
(-1.8)
A 		37.7
(-1.9)
A 		44
C 5.2
(-3)
A 		63.9
(3)
A 		41.9
(0.8)
A 		48.6
(1.4)
A 		59
avr 20.5
(-3) 		72.2
(3) 		40.9
(-0.6) 		44.9
(-0.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 31.1
(2.6)
A 		15
(-1.1)
A 		19
(-0.2)
A 		32.7
(3)
A 		6.7
(-3)
A 		20.9
(0.3)
A 		26
B 33.3
(1)
A 		48.7
(3)
P 		5.1
(-2.8)
A 		3.4
(-3)
A 		27.1
(0.1)
P 		13.6
(-1.6)
A 		45
C 2.9
(-3)
A 		36.9
(2.5)
A 		18
(-0.6)
A 		40.3
(3)
A 		4.9
(-2.7)
A 		33.2
(1.9)
A 		37
avr 22.4
(-0.2) 		33.5
(3) 		14
(-2.7) 		25.5
(0.7) 		12.9
(-3) 		22.6
(-0.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.6
(-1.5)
A 		17
(3)
A 		11
(-0.6)
A 		7.1
(-3)
A 		10
B 9.5
(-2.1)
A 		18.4
(3)
P 		9
(-2.4)
A 		8
(-3)
A 		10
C 1.7
(-3)
A 		18.4
(3)
A 		14.6
(1.6)
A 		8.2
(-0.7)
A 		17
avr 6.9
(-3) 		17.9
(3) 		11.5
(-0.5) 		7.8
(-2.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.7
(0.5)
A 		5.4
(0.2)
A 		4.1
(-1)
A 		8.3
(3)
A 		2
(-3)
A 		5.1
(-0)
A 		6
B 11.6
(1.2)
A 		16.2
(3)
P 		1.2
(-2.9)
A 		0.9
(-3)
A 		11
(1)
P 		5.1
(-1.4)
A 		15
C 1.1
(-3)
A 		11.3
(3)
A 		4.6
(-0.9)
A 		8.1
(1.1)
A 		1.6
(-2.7)
A 		11.1
(2.9)
A 		10
avr 6.1
(-0.8) 		11
(3) 		3.3
(-3) 		5.8
(-1.1) 		4.9
(-1.8) 		7.1
(-0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8139
Sequence Type Exemplar sequence
Representative Public ID Y71D11A.1 NCBI
Target Description Y71D11A.1 /REP_DB=WormBase Gene ID /WP=CE26243 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064939(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064939 NCBI Caenorhabditis elegans Y71D11A.1 (Y71D11A.1) mRNA, complete cds. 10/11 None
GENEFINDER00000010968 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1152032:1155273:1 10/11 None
Y71D11A.1 ENSEMBL cdna:known chromosome:CEL140:III:1152032:1180880:1 gene:Y71D11A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1152714-1155363(+) 96.12 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71D11A.1
Entrez Gene 190583 Entrez gene
WormBase CE38125 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
30288 periplasmic space (sensu Gram-negative Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497340 Y71D11A.1 [Caenorhabditis elegans] 0.0
blast CAE66457 Hypothetical protein CBG11734 [Caenorhabditis briggsae] 0.0
blast ABA00154 Hypothetical protein Y71D11A.1 [Caenorhabditis elegans] 0.0
blast CAE66455 Hypothetical protein CBG11732 [Caenorhabditis briggsae] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 6.8E-9
Pfam IPR002126 EMBL-EBI Cadherin 5.2E-5
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-21
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-6
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-6
Pfam IPR002126 EMBL-EBI Cadherin 8.8E-14
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-4
Pfam IPR002126 EMBL-EBI Cadherin 1.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497340.2 1 2774-2796
Y71D11A.1 1 2774-2796
Sequence
Target Sequence 
>C. ELEGANS:176543_AT
gagcttgaggcttatagtttcggataatgcaaaggaaaattcacggaaatccacaacttt
tataaatttggtcgaaaaatcgccgaatcttgcattaccaaagactacggtagcccctac
aactactacagtaccccgtacgactactacagtaccccccactaccactacagtaccccc
aaccactactacagtacccccaatcaccacaacatattctgaagacatcattgactcgga
agtgacaaaatcgccgcaggagctcattgcagagctcaaaaaagctttgaagtcggaaat
ttctggaaaaccgaaaattttcaaggaagccgaggagcccgaaatcgattttgtagcttt
tggaacgaaaaaccgagagatgaacgcaattgacactgaaaattcggaggaaattgaaaa
attcgagccaatcggagcgacacggtttgctcagtgctccgtgaggactacagtaccaga
aaactcaccgaaaggcacaaaagttgctcatttggagactttgaacaggagaaatgtgag
ttttcggattcagcacgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTGAGGCTTATAGTTTCGGAT 526 387 678 Antisense
AAATCGCCGAATCTTGCATTACCAA 402 117 754 Antisense
CCCCAATCACCACAACATATTCTGA 86 263 875 Antisense
AAGACATCATTGACTCGGAAGTGAC 517 153 899 Antisense
AAAATCGCCGCAGGAGCTCATTGCA 310 133 924 Antisense
GAAGCCGAGGAGCCCGAAATCGATT 93 343 1003 Antisense
AATTCGAGCCAATCGGAGCGACACG 597 177 1097 Antisense
GAGCGACACGGTTTGCTCAGTGCTC 138 387 1112 Antisense
GTGCTCCGTGAGGACTACAGTACCA 685 477 1131 Antisense
GTTGCTCATTTGGAGACTTTGAACA 569 439 1180 Antisense
GTGAGTTTTCGGATTCAGCACGACG 699 483 1213 Antisense
Sequence Source Affymetrix Proprietary Database