[Home] | [Total List]

[176539_at]

Description Y102A11A.B /REP_DB=WormBase Gene ID /WP=CE26474 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 83      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 709
1 2 3 4 range
A 69.5
(-2.5)
A 		633.5
(3)
P 		493.1
(1.6)
P 		19.3
(-3)
A 		614
B 90.6
(-2.6)
A 		696.3
(3)
P 		479.5
(1)
P 		42.7
(-3)
A 		654
C 50.2
(-2.8)
A 		728.4
(3)
P 		451.6
(0.6)
P 		23.2
(-3)
A 		705
avr 70.1
(-2.6) 		686.1
(3) 		474.7
(1.1) 		28.4
(-3) 		658

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 252.1
(-3)
A 		370.5
(1.4)
P 		325.2
(-0.3)
P 		375.7
(1.6)
P 		412.3
(3)
P 		275.2
(-2.1)
P 		160
B 212.3
(-3)
A 		389.1
(2.1)
P 		212.5
(-3)
P 		421.4
(3)
P 		394.7
(2.2)
P 		372.7
(1.6)
P 		209
C 176.9
(-3)
A 		440.5
(3)
P 		348.3
(0.9)
A 		354.7
(1)
P 		368.1
(1.4)
P 		421.3
(2.6)
P 		264
avr 213.8
(-3) 		400
(3) 		295.3
(-0.4) 		383.9
(2.5) 		391.7
(2.7) 		356.4
(1.6) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 25.3
(-2)
A 		137.5
(3)
P 		128.9
(2.6)
P 		2.8
(-3)
A 		135
B 28.9
(-2.3)
A 		172
(3)
P 		111.1
(0.8)
P 		9.1
(-3)
A 		163
C 16.6
(-2.6)
A 		209.4
(3)
P 		157.4
(1.5)
P 		3.9
(-3)
A 		206
avr 23.6
(-2.3) 		173
(3) 		132.5
(1.6) 		5.3
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 46.5
(-3)
A 		131.8
(3)
P 		70.8
(-1.3)
P 		95.3
(0.4)
P 		124.4
(2.5)
P 		67
(-1.6)
P 		85
B 73.9
(-1.8)
A 		129.5
(1.3)
P 		51.6
(-3)
P 		111.6
(0.3)
P 		160.4
(3)
P 		139
(1.8)
P 		109
C 65.6
(-3)
A 		134.4
(2.5)
P 		88.7
(-1.2)
A 		71.3
(-2.5)
P 		119.1
(1.3)
P 		141
(3)
P 		75
avr 62
(-3) 		131.9
(2.8) 		70.4
(-2.3) 		92.7
(-0.5) 		134.6
(3) 		115.7
(1.4) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19620
Sequence Type Exemplar sequence
Representative Public ID Y102A11A.B NCBI
Target Description Y102A11A.B /REP_DB=WormBase Gene ID /WP=CE26474 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075975 NCBI Caenorhabditis elegans Y102A11A.7 (Y102A11A.7) mRNA, complete cds. 11/11 None
SNAP00000043293 ENSEMBL cdna:SNAP chromosome:CEL140:X:2036098:2038071:-1 11/11 None
GENEFINDER00000043302 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2036098:2038071:-1 11/11 None
Y102A11A.7 ENSEMBL cdna:known chromosome:CEL140:X:2036098:2038071:-1 gene:Y102A11A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2036097-2038071(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A11A.7
Entrez Gene 190859 Entrez gene
SwissProt Q95XJ8 EMBL-EBI
WormBase CE26474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39310 Hypothetical protein Y102A11A.7 [Caenorhabditis elegans] ref|NP_508376.1| Y102A11A.7 [Caenorhabditis elegans] 1.0E-95
blast CAE58915 Hypothetical protein CBG02174 [Caenorhabditis briggsae] 4.0E-89
blast CAA88597 Hypothetical protein F59B10.3 [Caenorhabditis elegans] ref|NP_496264.2| F59B10.3 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508376.1 1 95-117
Y102A11A.7 1 95-117
SNAP00000043293 1 95-117
GENEFINDER00000043302 1 95-117
Sequence
Target Sequence 
>C. ELEGANS:176539_AT
ttgcgtaatcgttgggattccccagatgctgagccaaaaaacatcacctctcttcgaacc
atcgagaaacttctctccgatgccattgaagcacctcgccttgttttattcgagaagaga
gtgaacaccattgacccgtcgttttacgactgtgtgtattcgatcgcagattcttcaaat
accatcaccgaacgatgttatagagatattggatgctgtgctagtggatgttgcacaaat
actgaatggcaagaaaagtacggatgggctgttgcacttatttgtatattttctcttgtt
gtcattctcacggtaatttgttggatgggaatatggctttgtaatagaagaaaagacaag
aaccaaaagaaggaattactcaaatttggaagctcgtcttctgtttcaaatatgtctttt
gcatatccaattgctaatgggcattatcatttcgggaccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGTAATCGTTGGGATTCCCCAG 474 695 28 Antisense
GATTCCCCAGATGCTGAGCCAAAAA 523 433 43 Antisense
CAAAAAACATCACCTCTCTTCGAAC 22 191 62 Antisense
GAACCATCGAGAAACTTCTCTCCGA 73 347 83 Antisense
TCTCCGATGCCATTGAAGCACCTCG 81 611 101 Antisense
GCACCTCGCCTTGTTTTATTCGAGA 146 297 118 Antisense
TGAACACCATTGACCCGTCGTTTTA 27 573 149 Antisense
GTACGGATGGGCTGTTGCACTTATT 362 459 285 Antisense
TCTCTTGTTGTCATTCTCACGGTAA 117 613 319 Antisense
ATTTGGAAGCTCGTCTTCTGTTTCA 532 17 411 Antisense
TGGGCATTATCATTTCGGGACCGGA 606 553 465 Antisense
Sequence Source Affymetrix Proprietary Database