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[176538_at]

Description Y46E12BR.A /REP_DB=WormBase Gene ID /WP=CE26540 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 37      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 84.9
(0.4)
A 		9.2
(-2.8)
A 		4.6
(-3)
A 		146.3
(3)
A 		142
B 38.9
(-0.6)
A 		85.3
(3)
A 		7.6
(-3)
A 		66.1
(1.5)
A 		78
C 68.6
(-0.5)
A 		24
(-2.3)
A 		7.7
(-3)
A 		154.7
(3)
A 		147
avr 64.1
(-0) 		39.5
(-1.3) 		6.6
(-3) 		122.4
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 52.1
(3)
A 		34.4
(0.8)
A 		38
(1.2)
A 		4.2
(-3)
A 		40.9
(1.6)
A 		16.6
(-1.4)
A 		48
B 23.8
(0.8)
A 		18.1
(-0.3)
A 		15.2
(-0.8)
A 		36.2
(3)
A 		3.1
(-3)
A 		34.2
(2.6)
A 		33
C 38.9
(1.9)
A 		30.1
(0.7)
A 		3.5
(-3)
A 		46.6
(3)
A 		17.5
(-1.1)
A 		42.9
(2.5)
A 		43
avr 38.3
(3) 		27.5
(-0.3) 		18.9
(-3) 		29
(0.1) 		20.5
(-2.5) 		31.2
(0.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.9
(3)
A 		2
(-2.8)
A 		1.2
(-3)
A 		21.4
(1.1)
A 		30
B 12.4
(0.3)
A 		21.1
(3)
A 		1.8
(-3)
A 		14.1
(0.8)
A 		19
C 22.7
(2.1)
A 		6.9
(-1.9)
A 		2.7
(-3)
A 		26.1
(3)
A 		23
avr 22
(3) 		10
(-0.6) 		1.9
(-3) 		20.5
(2.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.6
(1.6)
A 		12.3
(3)
A 		8.3
(0.9)
A 		1.1
(-3)
A 		12.3
(3)
A 		4.1
(-1.4)
A 		11
B 8.3
(0.7)
A 		6
(-0.5)
A 		3.7
(-1.7)
A 		9.6
(1.3)
A 		1.3
(-3)
A 		12.8
(3)
A 		12
C 14.4
(3)
A 		9.2
(0.7)
A 		0.9
(-3)
A 		9.4
(0.8)
A 		5.7
(-0.9)
A 		14.4
(3)
A 		14
avr 10.8
(3) 		9.2
(1.5) 		4.3
(-3) 		6.7
(-0.8) 		6.4
(-1.1) 		10.4
(2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18983
Sequence Type Exemplar sequence
Representative Public ID Y46E12BR.A NCBI
Target Description Y46E12BR.A /REP_DB=WormBase Gene ID /WP=CE26540 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064921
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064921 NCBI Caenorhabditis elegans Y46E12BR.1 (Y46E12BR.1) mRNA, complete cds. None
Y46E12BR.1 ENSEMBL cdna:known chromosome:CEL140:II:15196104:15197965:1 gene:Y46E12BR.1 None
SNAP00000033363 ENSEMBL cdna:SNAP chromosome:CEL140:II:15196623:15197636:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15196100-15197572(+) 87.53 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46E12BR.1
Entrez Gene 266874 Entrez gene
SwissProt Q965N5 EMBL-EBI
WormBase CE37170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68492 Hypothetical protein Y46E12BR.1 [Caenorhabditis elegans] ref|NP_497322.2| Y46E12BR.1 [Caenorhabditis elegans] 2.0E-93
Sequence
Target Sequence 
>C. ELEGANS:176538_AT
gtcctgcttaatttgtgtactcctctcggacaatttttttatcctaatttttttgtcgaa
ctttcatgtaccaaatctcctctcatgtttcacctcaaaagatcattttaagaccaaaat
ttgttcatctatgtacattgttataatctctttgattgaaaaaattataaaatcatttat
atttgaaaattttcgacagcaatgtggttcttacgaagcaggatgttcggaggatctggc
gatcaaaatgatagggatcgagtcttcaatcatcatattttttggcaaaattatccaaga
aaggttccgaattgcctaccttttagcaacctactgcctgcctgcaggcaggcgtaaaaa
tagtcttataggtacaaagagcctcgctgccatggatattaaagatttgctttgctgcaa
tttttttatagacaaactcggcaaattggcaatttgccgaggacgaagaagcgccgaggc
gaatcatggatgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTGCTTAATTTGTGTACTCCTC 465 475 270 Antisense
GAACTTTCATGTACCAAATCTCCTC 381 349 327 Antisense
TCCTCTCATGTTTCACCTCAAAAGA 342 593 347 Antisense
GACAGCAATGTGGTTCTTACGAAGC 334 369 464 Antisense
GGATGTTCGGAGGATCTGGCGATCA 62 515 490 Antisense
AGGGATCGAGTCTTCAATCATCATA 706 57 522 Antisense
TGCCTACCTTTTAGCAACCTACTGC 515 583 582 Antisense
TAGGTACAAAGAGCCTCGCTGCCAT 204 653 638 Antisense
GAGCCTCGCTGCCATGGATATTAAA 286 385 648 Antisense
TGCCGAGGACGAAGAAGCGCCGAGG 685 583 724 Antisense
GCGCCGAGGCGAATCATGGATGCAC 289 287 740 Antisense
Sequence Source Affymetrix Proprietary Database