[Home] | [Total List]

[176536_at]

Description Y46E12BR.B /REP_DB=WormBase Gene ID /WP=CE26541 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 63      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 50.9
(1.4)
A 		7.3
(-3)
A 		63.4
(2.6)
A 		67.4
(3)
A 		60
B 48.8
(1.7)
A 		46.5
(1.1)
A 		29.3
(-3)
A 		54.2
(3)
P 		25
C 46.1
(-1.3)
A 		67
(1.6)
P 		33.5
(-3)
P 		77.4
(3)
M 		44
avr 48.6
(-1.1) 		40.3
(-3) 		42.1
(-2.6) 		66.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 49.5
(1)
A 		7
(-3)
A 		55.2
(1.6)
A 		70.5
(3)
A 		54.4
(1.5)
P 		44.2
(0.5)
A 		64
B 17.6
(-3)
A 		46.5
(1.7)
A 		54.4
(3)
P 		31.2
(-0.8)
A 		45.8
(1.6)
P 		39.8
(0.6)
A 		37
C 51.5
(-0.4)
A 		45.3
(-1)
A 		82.9
(3)
P 		50.4
(-0.5)
A 		27
(-3)
A 		40.9
(-1.5)
A 		56
avr 39.5
(-1.7) 		32.9
(-3) 		64.2
(3) 		50.7
(0.4) 		42.4
(-1.2) 		41.6
(-1.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.5
(3)
A 		1.6
(-3)
A 		16.6
(2.3)
A 		9.9
(-0.1)
A 		17
B 15.6
(3)
A 		11.5
(0.2)
A 		6.8
(-3)
A 		11.5
(0.2)
P 		9
C 15.3
(-0.2)
A 		19.3
(3)
P 		11.7
(-3)
P 		13.1
(-1.9)
M 		8
avr 16.5
(3) 		10.8
(-3) 		11.7
(-2.1) 		11.5
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.1
(-0.4)
A 		2.5
(-3)
A 		12
(0.7)
A 		17.9
(3)
A 		16.4
(2.4)
P 		10.8
(0.2)
A 		15
B 6.1
(-3)
A 		15.5
(1.5)
A 		13.2
(0.4)
P 		8.3
(-1.9)
A 		18.6
(3)
P 		14.9
(1.2)
A 		13
C 19.1
(2)
A 		13.8
(-0.5)
A 		21.1
(3)
P 		10.1
(-2.3)
A 		8.7
(-3)
A 		13.7
(-0.6)
A 		12
avr 11.4
(-2) 		10.6
(-3) 		15.4
(3) 		12.1
(-1.1) 		14.6
(2) 		13.1
(0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19047
Sequence Type Exemplar sequence
Representative Public ID Y46E12BR.B NCBI
Target Description Y46E12BR.B /REP_DB=WormBase Gene ID /WP=CE26541 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y46E12BR.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y46E12BR.B Y46E12BR.B /REP_DB=WormBase Gene ID /WP=CE26541 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:176536_AT
tcatgcctggttacgtgtctgcttacttatttgtccacgtgactgtctatgtgcctgcct
acatgcatgtttacgtgtctgcctacttattcacctatgtgcctgcctacatgcctgcct
atatgcctgcctacatgcctgcctacatgcctgcctacgtacttgcctacacgcctgcct
gcatttctttctacatagcacaaaagtgcagaataaaaaaagaggaacaaattgagcaag
agaccatggggaacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGCCTGGTTACGTGTCTGCTTA 121 623 23 Antisense
ACGTGTCTGCTTACTTATTTGTCCA 636 95 35 Antisense
CTGCTTACTTATTTGTCCACGTGAC 266 237 41 Antisense
TCCACGTGACTGTCTATGTGCCTGC 597 587 56 Antisense
TGCCTGCCTACATGCATGTTTACGT 603 585 74 Antisense
ATGTTTACGTGTCTGCCTACTTATT 551 47 89 Antisense
TTTACGTGTCTGCCTACTTATTCAC 549 673 92 Antisense
CTACTTATTCACCTATGTGCCTGCC 291 227 105 Antisense
CTGCCTGCATTTCTTTCTACATAGC 448 235 197 Antisense
GCATTTCTTTCTACATAGCACAAAA 217 309 203 Antisense
TGAGCAAGAGACCATGGGGAACGGA 355 565 255 Antisense
Sequence Source Affymetrix Proprietary Database