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[176535_at]

Description Y39G10AR.F /REP_DB=WormBase Gene ID /WP=CE26523 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      6grp_highest_nonorm > 72      6grp_total > 94      4grp_total > 17      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 252
(-3)
M 		367.7
(-0.4)
M 		312
(-1.6)
M 		517.9
(3)
P 		266
B 245.3
(-3)
A 		252.7
(-2.7)
A 		296.7
(-0.8)
A 		388.1
(3)
P 		143
C 236.6
(-3)
A 		354.7
(0.4)
A 		288.4
(-1.5)
P 		447.4
(3)
P 		211
avr 244.6
(-3) 		325
(-0.7) 		299
(-1.4) 		451.1
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 394.8
(-1.5)
P 		335.3
(-3)
P 		398.7
(-1.4)
P 		421.9
(-0.8)
P 		573.8
(3)
P 		500.9
(1.2)
P 		239
B 372.7
(-3)
P 		400.8
(-2.3)
P 		399.1
(-2.3)
P 		401.3
(-2.3)
P 		608.5
(3)
P 		495.5
(0.1)
P 		236
C 305.9
(-3)
P 		417.2
(-1)
P 		347.8
(-2.2)
P 		635.4
(3)
P 		446.9
(-0.4)
P 		455.6
(-0.3)
P 		330
avr 357.8
(-3) 		384.4
(-2.1) 		381.9
(-2.2) 		486.2
(1.2) 		543.1
(3) 		484
(1.1) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 91.8
(3)
M 		79.8
(-1.5)
M 		81.6
(-0.8)
M 		75.8
(-3)
P 		16
B 78.2
(1.7)
A 		62.4
(-3)
A 		68.7
(-1.1)
A 		82.7
(3)
P 		20
C 78.3
(-2.3)
A 		102
(3)
A 		100.5
(2.7)
P 		75.4
(-3)
P 		27
avr 82.8
(2.1) 		81.4
(0.6) 		83.6
(3) 		78
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 72.8
(-3)
P 		119.3
(-0.2)
P 		86.8
(-2.2)
P 		107
(-1)
P 		173.2
(3)
P 		122
(-0.1)
P 		100
B 129.7
(-1.7)
P 		133.4
(-1.5)
P 		96.9
(-3)
P 		106.3
(-2.6)
P 		247.2
(3)
P 		184.8
(0.5)
P 		150
C 113.4
(-0.7)
P 		127.3
(0.6)
P 		88.5
(-3)
P 		127.8
(0.7)
P 		144.6
(2.3)
P 		152.5
(3)
P 		64
avr 105.3
(-2.1) 		126.7
(-0.8) 		90.7
(-3) 		113.7
(-1.6) 		188.3
(3) 		153.1
(0.8) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18661
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.F NCBI
Target Description Y39G10AR.F /REP_DB=WormBase Gene ID /WP=CE26523 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058562 NCBI Caenorhabditis elegans Y39G10AR.15 (Y39G10AR.15) mRNA, complete cds. 11/11 None
SNAP00000028458 ENSEMBL cdna:SNAP chromosome:CEL140:I:2322077:2322552:-1 9/11 None
GENEFINDER00000028484 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2322077:2322552:-1 9/11 None
Y39G10AR.15 ENSEMBL cdna:known chromosome:CEL140:I:2322077:2327253:-1 gene:Y39G10AR.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028459 2/11 Cross Hyb Matching Probes None
GENEFINDER00000028475 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2322076-2327253(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AR.15
Entrez Gene 171794 Entrez gene
SwissProt Q95XQ7 EMBL-EBI
WormBase CE26523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490963 Y39G10AR.15 [Caenorhabditis elegans] gb|AAK39604.1| Hypothetical protein Y39G10AR.15 [Caenorhabditis elegans] 0.0
blast CAA98136 Hypothetical protein M117.4 [Caenorhabditis elegans] ref|NP_502238.1| M117.4 [Caenorhabditis elegans] 1.0E-165
blast NP_490963 Y39G10AR.15 [Caenorhabditis elegans] gb|AAK39604.1| Hypothetical protein Y39G10AR.15 [Caenorhabditis elegans] 4.0E-59
blast CAE60289 Hypothetical protein CBG03873 [Caenorhabditis briggsae] 3.0E-48
blast CAE60302 Hypothetical protein CBG03889 [Caenorhabditis briggsae] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:176535_AT
agaagtcgccgtttgaggagccgagaaaagtcgctttcaatgtttcagacaagtgtacgt
tgcacgtatattctagaaaacgccgtccactgacgaatccggggaaaagcgaacgtttca
cggagaagaaatatacgagggattttcatttaaaaatgtcttcaatggcttttgacggag
aagcaccggagactgacgatgaaattgaagaggaaaattatggaaaatctgaacaacaag
agaaaatcacgattaaagagcaaattccggtcgacaagaagcttgagaagcattggacgc
tcgccgcaacggaattaatcaatagttgttacaagagatccgcgaatcaggagaaaacga
tgcaaaaagtgacggaatccgcggcagattgtttcacatcgatgcagaacgtcgccgcca
aattgaacgtgattcacacgaatgtgacgaggcttgaggattcggtggccgatctgctgg
aggcttcgcaattgattcccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTCGCCGTTTGAGGAGCCGAG 441 73 1583 Antisense
GAAAACGCCGTCCACTGACGAATCC 83 355 1658 Antisense
GGAGAAGCACCGGAGACTGACGATG 565 519 1759 Antisense
TAAAGAGCAAATTCCGGTCGACAAG 1 639 1836 Antisense
TTGAGAAGCATTGGACGCTCGCCGC 43 707 1865 Antisense
GACGCTCGCCGCAACGGAATTAATC 364 379 1878 Antisense
TCCGCGGCAGATTGTTTCACATCGA 74 597 1960 Antisense
TCACATCGATGCAGAACGTCGCCGC 345 625 1976 Antisense
GTCGCCGCCAAATTGAACGTGATTC 592 475 1993 Antisense
TGAGGATTCGGTGGCCGATCTGCTG 288 567 2037 Antisense
GGAGGCTTCGCAATTGATTCCCAAA 522 515 2061 Antisense
Sequence Source Affymetrix Proprietary Database