[Home] | [Total List]

[176534_at]

Description Y55B1BR.1 /REP_DB=WormBase Gene ID /WP=CE22506 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 36      6grp_total > 19      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 94.8
(-3)
P 		151.4
(3)
P 		137.5
(1.5)
P 		108.5
(-1.5)
A 		57
B 97.4
(-2.1)
P 		129.6
(3)
P 		123
(2)
P 		91.8
(-3)
A 		38
C 147.4
(3)
P 		134.8
(1.8)
P 		86.9
(-3)
P 		109.2
(-0.8)
P 		61
avr 113.2
(-1.3) 		138.6
(3) 		115.8
(-0.9) 		103.2
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 165.5
(3)
P 		88.4
(-1.2)
P 		55.2
(-3)
A 		72.2
(-2.1)
P 		91.4
(-1)
P 		76.1
(-1.9)
A 		110
B 100.3
(3)
P 		77.3
(-1.5)
P 		90.6
(1.1)
M 		69.8
(-3)
A 		82.6
(-0.5)
P 		69.6
(-3)
A 		31
C 127.9
(3)
P 		70.9
(-1.9)
P 		88.2
(-0.4)
P 		116.7
(2)
A 		112.6
(1.7)
P 		58.3
(-3)
A 		70
avr 131.2
(3) 		78.9
(-2) 		78
(-2.1) 		86.2
(-1.3) 		95.5
(-0.4) 		68
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 34.5
(2.6)
P 		32.9
(2.1)
P 		35.9
(3)
P 		15.9
(-3)
A 		20
B 31.1
(2.6)
P 		32
(3)
P 		28.5
(1.3)
P 		19.6
(-3)
A 		12
C 48.8
(3)
P 		38.8
(1)
P 		30.3
(-0.7)
P 		18.4
(-3)
P 		30
avr 38.1
(3) 		34.6
(2) 		31.6
(1.1) 		18
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 30.5
(2.7)
P 		31.5
(3)
P 		12
(-3)
A 		18.3
(-1.1)
P 		27.6
(1.8)
P 		18.5
(-1)
A 		20
B 34.9
(3)
P 		25.7
(-0.4)
P 		22
(-1.7)
M 		18.5
(-3)
A 		33.6
(2.5)
P 		25.9
(-0.3)
A 		16
C 47.4
(3)
P 		21.6
(-2.5)
P 		22.4
(-2.4)
P 		23.5
(-2.1)
A 		36.4
(0.6)
P 		19.5
(-3)
A 		28
avr 37.6
(3) 		26.3
(-0.6) 		18.8
(-3) 		20.1
(-2.6) 		32.5
(1.4) 		21.3
(-2.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8116
Sequence Type Exemplar sequence
Representative Public ID Y55B1BR.1 NCBI
Target Description Y55B1BR.1 /REP_DB=WormBase Gene ID /WP=CE22506 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064799 NCBI Caenorhabditis elegans Y55B1BR.1 (Y55B1BR.1) mRNA, complete cds. 11/11 None
Y55B1BR.1 ENSEMBL cdna:known chromosome:CEL140:III:440640:444909:1 gene:Y55B1BR.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040175 5/11 Cross Hyb Matching Probes None
GENEFINDER00000040186 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:440639-444909(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1BR.1
Entrez Gene 190301 Entrez gene
SwissProt Q95XW6 EMBL-EBI
WormBase CE22506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85501 Hypothetical protein Y55B1BR.1 [Caenorhabditis elegans] ref|NP_497200.1| Y55B1BR.1 [Caenorhabditis elegans] 0.0
blast AAK85502 Hypothetical protein Y55B1BR.2 [Caenorhabditis elegans] ref|NP_497199.1| Y55B1BR.2 [Caenorhabditis elegans] 3.0E-60
blast CAE69579 Hypothetical protein CBG15796 [Caenorhabditis briggsae] 7.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497200.1 2 299-321,501-523
Y55B1BR.1 2 299-321,501-523
Sequence
Target Sequence 
>C. ELEGANS:176534_AT
ggagctcttgaaccactagttgtctcagtaagctcggatgtagaatgggtctctgaagtt
caaaaatgtcagaaattcgtcgccatgccagaacttgtgtaccaaacctacaaatcccaa
ttcaaatcagcgaacaaactgtttttggccagcacacactgggaggacttcaaggtttta
ttggagtatattgatgccggcaattttattaaggacatcgagtcggtttgcaaaaagccc
atcgcaatggatatacccttcgagaatcttgccacttttgtgctcaccgcagttggaagc
ctaatggaagaatatgaaaaggagcagaagcttccgagcatcaactccttcccctcccta
gtctccactggaaacactgtggaaagttcagaagactccgacacctacattccgcctcca
accagagatcagaacattgagcgatcccgaaataatttcaaacttctctgcatcatcgtt
ttcgccggactttctctctggatcatctttgtcagtgtcttcgatccattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTCTTGAACCACTAGTTGTCT 546 519 1060 Antisense
ATGTCAGAAATTCGTCGCCATGCCA 216 49 1125 Antisense
TCGCCATGCCAGAACTTGTGTACCA 416 599 1139 Antisense
GAGTCGGTTTGCAAAAAGCCCATCG 257 399 1279 Antisense
GAGAATCTTGCCACTTTTGTGCTCA 593 389 1321 Antisense
TGCTCACCGCAGTTGGAAGCCTAAT 146 579 1340 Antisense
CTCCCTAGTCTCCACTGGAAACACT 107 235 1413 Antisense
AAGTTCAGAAGACTCCGACACCTAC 646 155 1443 Antisense
TTCCGCCTCCAACCAGAGATCAGAA 219 699 1469 Antisense
ATTTCAAACTTCTCTGCATCATCGT 523 15 1514 Antisense
TTGTCAGTGTCTTCGATCCATTCAA 701 705 1568 Antisense
Sequence Source Affymetrix Proprietary Database