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[176533_at]

Description Y71D11A.2 /REP_DB=WormBase Gene ID /WP=CE24602 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 73      6grp_total > 29      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 629
(3)
P 		595.7
(1.3)
P 		513.1
(-3)
P 		585.4
(0.7)
P 		116
B 550.5
(1.9)
P 		585.3
(3)
P 		568.4
(2.5)
P 		393.4
(-3)
P 		192
C 541.5
(1)
P 		568.2
(3)
P 		489.2
(-3)
P 		495.2
(-2.5)
P 		79
avr 573.7
(2.4) 		583.1
(3) 		523.6
(-0.9) 		491.3
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 649.1
(3)
P 		465.2
(-1.6)
P 		574
(1.1)
P 		407
(-3)
P 		596.2
(1.7)
P 		575.6
(1.2)
P 		242
B 594.6
(3)
P 		495.1
(-3)
P 		569.9
(1.5)
P 		498.7
(-2.8)
P 		537.4
(-0.4)
P 		551.7
(0.4)
P 		100
C 536
(2.9)
P 		449.4
(-3)
P 		525.8
(2.2)
P 		457
(-2.5)
P 		537.7
(3)
P 		507.7
(1)
P 		88
avr 593.2
(3) 		469.9
(-2.3) 		556.6
(1.4) 		454.2
(-3) 		557.1
(1.4) 		545
(0.9) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 229
(3)
P 		129.3
(-1.2)
P 		134.1
(-1)
P 		85.7
(-3)
P 		143
B 175.5
(3)
P 		144.6
(1)
P 		131.7
(0.1)
P 		83.8
(-3)
P 		92
C 179.2
(3)
P 		163.4
(2)
P 		170.5
(2.5)
P 		83.5
(-3)
P 		96
avr 194.6
(3) 		145.8
(0.3) 		145.4
(0.3) 		84.3
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 119.6
(-1.7)
P 		165.4
(1.9)
P 		125
(-1.3)
P 		103.2
(-3)
P 		179.9
(3)
P 		140.2
(-0.1)
P 		77
B 206.9
(2.2)
P 		164.8
(-0.7)
P 		138.4
(-2.6)
P 		132.1
(-3)
P 		218.4
(3)
P 		205.7
(2.1)
P 		86
C 198.7
(3)
P 		137.1
(-0.5)
P 		133.8
(-0.6)
P 		91.9
(-3)
P 		174
(1.6)
P 		170
(1.4)
P 		107
avr 175.1
(1.8) 		155.8
(0.4) 		132.4
(-1.3) 		109.1
(-3) 		190.8
(3) 		172
(1.6) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8295
Sequence Type Exemplar sequence
Representative Public ID Y71D11A.2 NCBI
Target Description Y71D11A.2 /REP_DB=WormBase Gene ID /WP=CE24602 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027761 NCBI Caenorhabditis elegans SMN (Survival of Motor Neuron protein) Related family member (smr-1) (smr-1) mRNA, complete cds. 11/11 None
GENEFINDER00000010966 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1143178:1145132:1 11/11 None
Y71D11A.2a ENSEMBL cdna:known chromosome:CEL140:III:1143160:1145189:1 gene:Y71D11A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027762 1/11 Cross Hyb Matching Probes None
Y71D11A.2b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175281 2 1 NM_001027761 176533_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1143177-1145132(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y71D11A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85507 Smn (survival of motor neuron protein) related protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022932.1| SMN (Survival of Motor Neuron protein) Related family member (smr-1) [Caenorhabditis elegans] 1.0E-100
blast CAE66451 Hypothetical protein CBG11727 [Caenorhabditis briggsae] 4.0E-85
blast AAP46266 Smn (survival of motor neuron protein) related protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022933.1| SMN (Survival of Motor Neuron protein) Related family member (smr-1) [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:176533_AT
gacctcggggagattatttcgctgcaggaagatttggcggaaaccgacaaggcagaatca
tcagagagggctgtggtggctccgcaagtgattcacaagtggacggtcggcgaacgagtt
atcgccccacatcccgacggaaaaaaggttttcgccagaatcgactcacttacgcccgcc
ggagtggctattaccttcacatctaccggcacgaaaaccatcgtagatcccgctgatctc
caactcccgcccgaaaatcagcgaaaaaattatgcatttgataacacaaagtcggcggcc
ggaccatcgactcaacacggcaaaaaggaatggcaagcagaaaaggagcgccgacgtcaa
aaagcgctcaaaaaacagcaaaaacagaaggagctcgactcgataaaggatggcgagaag
aaaagttggcaaaaattcaacacaaaagccaacgcgaaaggtctgaagggcctgaagaag
gtttcggcgacaggatcaagccaggatggctcggcgagcagcagcggcggcggcggagag
aagcgaggaacgatcgtctcgtcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTCGGGGAGATTATTTCGCTGC 592 379 112 Antisense
TGTGGTGGCTCCGCAAGTGATTCAC 431 553 183 Antisense
GTCGGCGAACGAGTTATCGCCCCAC 660 471 217 Antisense
TCGCCAGAATCGACTCACTTACGCC 529 597 263 Antisense
GAGTGGCTATTACCTTCACATCTAC 688 401 293 Antisense
ACATCTACCGGCACGAAAACCATCG 502 105 310 Antisense
AAACCATCGTAGATCCCGCTGATCT 18 127 326 Antisense
GATAACACAAAGTCGGCGGCCGGAC 304 421 391 Antisense
GACCATCGACTCAACACGGCAAAAA 106 383 413 Antisense
GGTTTCGGCGACAGGATCAAGCCAG 338 501 591 Antisense
GCGAGGAACGATCGTCTCGTCGAGA 247 291 654 Antisense
Sequence Source Affymetrix Proprietary Database