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[176532_at]

Description Y55B1BR.3 /REP_DB=WormBase Gene ID /WP=CE24463 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 91.5
(-0.7)
P 		136.2
(3)
A 		86.1
(-1.2)
A 		64
(-3)
A 		72
B 83
(2.3)
P 		61.4
(0.2)
A 		90.7
(3)
A 		27.9
(-3)
A 		63
C 99.1
(3)
P 		68.2
(-3)
A 		74.1
(-1.9)
P 		74.7
(-1.7)
P 		31
avr 91.2
(3) 		88.6
(2.6) 		83.6
(1.7) 		55.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 41.7
(-3)
A 		59.3
(-2)
A 		55.4
(-2.2)
M 		59.6
(-1.9)
A 		64.5
(-1.6)
A 		142.6
(3)
P 		101
B 98.8
(1.3)
P 		73.7
(-0.5)
A 		93.9
(0.9)
P 		38.6
(-3)
A 		54.5
(-1.9)
A 		123.3
(3)
P 		85
C 90.4
(1.1)
P 		118.3
(3)
P 		75.7
(0.1)
A 		31.3
(-3)
A 		45
(-2.1)
A 		73.9
(-0.1)
P 		87
avr 77
(-0.1) 		83.8
(0.5) 		75
(-0.3) 		43.2
(-3) 		54.7
(-2) 		113.3
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 33.3
(3)
P 		29.6
(2.1)
A 		22.5
(0.3)
A 		9.4
(-3)
A 		24
B 26.5
(3)
P 		15.2
(-0.3)
A 		21
(1.4)
A 		5.9
(-3)
A 		21
C 32.8
(3)
P 		19.6
(-0.9)
A 		25.8
(0.9)
P 		12.6
(-3)
P 		20
avr 30.9
(3) 		21.5
(0.4) 		23.1
(0.8) 		9.3
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 7.7
(-3)
A 		21.1
(-0)
A 		12.1
(-2)
M 		15.1
(-1.4)
A 		19.5
(-0.4)
A 		34.7
(3)
P 		27
B 34.4
(1.1)
P 		24.5
(-0.6)
A 		22.8
(-0.9)
P 		10.2
(-3)
A 		22.1
(-1)
A 		46
(3)
P 		36
C 33.5
(2.5)
P 		36.1
(3)
P 		19.3
(-0.4)
A 		6.3
(-3)
A 		14.6
(-1.3)
A 		24.7
(0.7)
P 		30
avr 25.2
(0.6) 		27.2
(1.1) 		18.1
(-1.1) 		10.5
(-3) 		18.7
(-1) 		35.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8228
Sequence Type Exemplar sequence
Representative Public ID Y55B1BR.3 NCBI
Target Description Y55B1BR.3 /REP_DB=WormBase Gene ID /WP=CE24463 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064797 NCBI Caenorhabditis elegans Y55B1BR.3 (Y55B1BR.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040185 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:428898:431596:1 11/11 None
SNAP00000040173 ENSEMBL cdna:SNAP chromosome:CEL140:III:429445:431596:1 11/11 None
Y55B1BR.3 ENSEMBL cdna:known chromosome:CEL140:III:429299:431749:1 gene:Y55B1BR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:429352-431596(+) 98.33 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1BR.3
Entrez Gene 175202 Entrez gene
SwissProt Q95XW8 EMBL-EBI
WormBase CE24463 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85503 Hypothetical protein Y55B1BR.3 [Caenorhabditis elegans] ref|NP_497198.1| Y55B1BR.3 [Caenorhabditis elegans] 1.0E-107
blast AAK85503 Hypothetical protein Y55B1BR.3 [Caenorhabditis elegans] ref|NP_497198.1| Y55B1BR.3 [Caenorhabditis elegans] 1.0E-100
blast AAK85503 Hypothetical protein Y55B1BR.3 [Caenorhabditis elegans] ref|NP_497198.1| Y55B1BR.3 [Caenorhabditis elegans] 1.0E-99
blast AAA83358 Hypothetical protein F32E10.6 [Caenorhabditis elegans] ref|NP_501232.1| F32E10.6 [Caenorhabditis elegans] 5.0E-43
blast AAA83358 Hypothetical protein F32E10.6 [Caenorhabditis elegans] ref|NP_501232.1| F32E10.6 [Caenorhabditis elegans] 7.0E-40
blast CAE61921 Hypothetical protein CBG05917 [Caenorhabditis briggsae] 5.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000953 EMBL-EBI Chromo 1.6E-5
Pfam IPR000953 EMBL-EBI Chromo 1.6E-5
Pfam IPR000953 EMBL-EBI Chromo 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:176532_AT
gtattccaggaaatcagccgcgaaggtggaatcgacagagtcctctggcaatgaagagga
ggaggaggttgaggaatccccgaagaagaagggtaagactccgagaaagtcttccaagaa
atcagccgccgtggaggaatcggataatgaggaagaagacgttgaggaatctccgaagaa
gagaacgtctccaagaaagtcttccaagaagcgggccgccaaggaagaatcagaagaatc
ttcggataatgaagtagaggaggttgaggactccccaaaaaagaacgacaagactctgag
aaagtctcccagaaagccagccgcgaaggtggaatcggaagagtcctttggcaatgaaga
ggaggaagaggttgaggaatccccgaagaagaagggtaagactccgagaaagtcttccaa
gaaatcagctgctaaggaagaatcggaagagtcctctgacgatgaagaagaggagcaagc
cgaggagaccaacggatcccacaccgagagtccaacaaagagcaagaccgatgagtccga
taac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCCAGGAAATCAGCCGCGAAG 311 451 1479 Antisense
GGTGGAATCGACAGAGTCCTCTGGC 226 499 1503 Antisense
GAGGAGGTTGAGGAATCCCCGAAGA 79 403 1540 Antisense
GAAATCAGCCGCCGTGGAGGAATCG 284 363 1596 Antisense
AACGTCTCCAAGAAAGTCTTCCAAG 334 143 1662 Antisense
AAGCGGGCCGCCAAGGAAGAATCAG 616 143 1687 Antisense
GAAAGCCAGCCGCGAAGGTGGAATC 43 359 1790 Antisense
GGAATCGGAAGAGTCCTTTGGCAAT 459 533 1809 Antisense
AAGCCGAGGAGACCAACGGATCCCA 336 149 1955 Antisense
CCCACACCGAGAGTCCAACAAAGAG 135 259 1976 Antisense
GAGCAAGACCGATGAGTCCGATAAC 697 389 1998 Antisense
Sequence Source Affymetrix Proprietary Database