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[176531_at]

Description Y71D11A.3 /REP_DB=WormBase Gene ID /WP=CE25548 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_high_8_8 > 60      6grp_highest_nonorm > 61      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 282.9
(1.2)
P 		306.5
(1.8)
P 		348.1
(3)
P 		136.3
(-3)
A 		212
B 249.2
(0.6)
P 		231.1
(0.2)
P 		358.4
(3)
P 		89.6
(-3)
P 		269
C 272.4
(1)
P 		288.7
(1.5)
P 		337.8
(3)
P 		140.8
(-3)
P 		197
avr 268.2
(0.9) 		275.4
(1.1) 		348.1
(3) 		122.2
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 472.9
(1.6)
P 		436.4
(1.1)
P 		563
(3)
P 		500.9
(2.1)
P 		255.9
(-1.7)
P 		168.1
(-3)
P 		395
B 430.6
(-0.1)
P 		480.7
(0.5)
P 		604
(2.1)
P 		675.1
(3)
P 		255.2
(-2.3)
P 		201.6
(-3)
P 		474
C 464.2
(0.3)
P 		327.6
(-1.3)
P 		696.3
(3)
P 		406.7
(-0.4)
P 		311.7
(-1.5)
P 		180.1
(-3)
P 		516
avr 455.9
(0.7) 		414.9
(0.2) 		621.1
(3) 		527.6
(1.7) 		274.3
(-1.8) 		183.3
(-3) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 103
(3)
P 		66.5
(0.4)
P 		91
(2.1)
P 		20
(-3)
A 		83
B 79.5
(2.7)
P 		57.1
(0.6)
P 		83
(3)
P 		19.1
(-3)
P 		64
C 90.2
(1.2)
P 		83
(0.8)
P 		117.7
(3)
P 		23.7
(-3)
P 		94
avr 90.9
(2.5) 		68.9
(0.8) 		97.2
(3) 		20.9
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 87.2
(-0.6)
P 		155.2
(3)
P 		122.6
(1.3)
P 		127
(1.5)
P 		77.2
(-1.1)
P 		40.9
(-3)
P 		114
B 149.8
(1.3)
P 		160
(1.9)
P 		146.7
(1.1)
P 		178.8
(3)
P 		103.7
(-1.3)
P 		75.2
(-3)
P 		104
C 172.1
(2.7)
P 		100
(-1)
P 		177.2
(3)
P 		81.8
(-1.9)
P 		100.9
(-0.9)
P 		60.3
(-3)
P 		117
avr 136.4
(2.2) 		138.4
(2.3) 		148.8
(3) 		129.2
(1.7) 		93.9
(-0.7) 		58.8
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8309
Sequence Type Exemplar sequence
Representative Public ID Y71D11A.3 NCBI
Target Description Y71D11A.3 /REP_DB=WormBase Gene ID /WP=CE25548 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064935(11), NM_001027764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064935 NCBI Caenorhabditis elegans Y71D11A.3a (Y71D11A.3) mRNA, complete cds. 11/11 None
NM_001027764 NCBI Caenorhabditis elegans Y71D11A.3b (Y71D11A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000010969 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1140004:1142838:1 11/11 None
Y71D11A.3a ENSEMBL cdna:known chromosome:CEL140:III:1116479:1142889:1 gene:Y71D11A.3 11/11 None
Y71D11A.3b ENSEMBL cdna:known chromosome:CEL140:III:1116513:1142838:1 gene:Y71D11A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1116512-1142838(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y71D11A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85508 Hypothetical protein Y71D11A.3a [Caenorhabditis elegans] ref|NP_497336.3| Y71D11A.3a [Caenorhabditis elegans] 0.0
blast AAN39661 Hypothetical protein Y71D11A.3b [Caenorhabditis elegans] ref|NP_001022935.1| Y71D11A.3b [Caenorhabditis elegans] dbj|BAB86940.1| 2-amino-3-carboxylmuconate-6-semialdehyde decarboxylase [Caenorhabditis elegans] sp|Q8T8B9|ACMSD_CAEEL 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase 0.0
blast CAE66452 Hypothetical protein CBG11728 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006992 EMBL-EBI Amidohydrolase 2 1.2E-18
Sequence
Target Sequence 
>C. ELEGANS:176531_AT
tgaagttggttcccacgtggcagaaaaatcgttggatcatcgtgatttttggccgcttta
taagatttgcgaggagctctcggtggtgctctttgtgcatccttgggatatgcacatgtg
ggacgggcggctggacaaatactggatgccatggctcgtcggaatgccatctgaaactgc
tcaagccatttgctcagtgctcatgggcaacattttggtgctcttccccaagttgaagct
ctgctttgcacatgggggcggcgcctacccacagattcgtggccgagtttctcacggatg
gaatgttaggccagacttgtgtgctggaaagtgtaaagttgctccgaataagctcgatgg
gctactgtggacggatagcttggttcatgacccaaaagctctcgaactgctgataaatac
cgttggaaaggagcatatagtgcttggcaccgactaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTTGGTTCCCACGTGGCAGAA 394 573 468 Antisense
GATCATCGTGATTTTTGGCCGCTTT 681 417 502 Antisense
TACTGGATGCCATGGCTCGTCGGAA 445 645 607 Antisense
ATGCCATCTGAAACTGCTCAAGCCA 464 41 631 Antisense
TCAAGCCATTTGCTCAGTGCTCATG 275 631 648 Antisense
TGGGCAACATTTTGGTGCTCTTCCC 420 553 671 Antisense
GCTCTTCCCCAAGTTGAAGCTCTGC 308 301 687 Antisense
ACAGATTCGTGGCCGAGTTTCTCAC 500 107 738 Antisense
GGACGGATAGCTTGGTTCATGACCC 582 523 836 Antisense
TCATGACCCAAAAGCTCTCGAACTG 503 619 852 Antisense
TATAGTGCTTGGCACCGACTACCCA 82 659 903 Antisense
Sequence Source Affymetrix Proprietary Database