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[176530_at]

Description Y55B1BR.4 /REP_DB=WormBase Gene ID /WP=CE25479 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 49.4
(3)
A 		35.3
(0.8)
A 		10.2
(-3)
A 		38.5
(1.3)
A 		39
B 33.6
(3)
A 		3.6
(-3)
A 		26.1
(1.5)
A 		23.6
(1)
A 		30
C 3.1
(-3)
A 		16.4
(-1.8)
A 		21.6
(-1.4)
A 		70.7
(3)
A 		68
avr 28.7
(-0.6) 		18.4
(-3) 		19.3
(-2.8) 		44.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 11.4
(3)
A 		6.6
(-0.4)
A 		3.1
(-2.9)
A 		6.8
(-0.3)
A 		3
(-3)
A 		7
(-0.1)
A 		8
B 36.1
(3)
A 		26.9
(1.3)
A 		9.9
(-2)
A 		10.5
(-1.9)
A 		4.5
(-3)
A 		4.9
(-2.9)
A 		32
C 3.2
(-2.9)
A 		20
(-0.7)
A 		8.9
(-2.2)
A 		47
(3)
A 		5.3
(-2.7)
A 		2.8
(-3)
A 		44
avr 16.9
(1.4) 		17.8
(1.7) 		7.3
(-1.9) 		21.4
(3) 		4.3
(-3) 		4.9
(-2.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18
(3)
A 		7.7
(-1)
A 		2.7
(-3)
A 		5.6
(-1.9)
A 		15
B 10.7
(3)
A 		0.9
(-3)
A 		6.1
(0.2)
A 		5
(-0.5)
A 		10
C 1
(-3)
A 		4.7
(-1)
A 		7.5
(0.6)
A 		11.9
(3)
A 		11
avr 9.9
(3) 		4.4
(-3) 		5.4
(-1.9) 		7.5
(0.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.1
(1.9)
A 		2.4
(3)
A 		0.7
(-3)
A 		1.7
(0.5)
A 		0.9
(-2.3)
A 		1.7
(0.5)
A 		2
B 12.6
(3)
A 		9
(1)
A 		2.4
(-2.7)
A 		2.8
(-2.4)
A 		1.8
(-3)
A 		1.8
(-3)
A 		11
C 1.2
(-2.8)
A 		6.1
(0.6)
A 		2.3
(-2)
A 		9.5
(3)
A 		1.7
(-2.4)
A 		0.9
(-3)
A 		9
avr 5.3
(2.3) 		5.8
(3) 		1.8
(-2.6) 		4.7
(1.5) 		1.5
(-3) 		1.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8214
Sequence Type Exemplar sequence
Representative Public ID Y55B1BR.4 NCBI
Target Description Y55B1BR.4 /REP_DB=WormBase Gene ID /WP=CE25479 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064800 NCBI Caenorhabditis elegans Y55B1BR.4 (Y55B1BR.4) mRNA, complete cds. 11/11 None
SNAP00000040181 ENSEMBL cdna:SNAP chromosome:CEL140:III:464865:471694:-1 11/11 None
GENEFINDER00000040184 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:464865:466068:-1 10/11 None
Y55B1BR.4 ENSEMBL cdna:known chromosome:CEL140:III:464865:471694:-1 gene:Y55B1BR.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040182 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:464864-471694(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1BR.4
Entrez Gene 190302 Entrez gene
SwissProt Q95XW5 EMBL-EBI
WormBase CE29125 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.6818.1.S1_S_AT similar to palmitoylated membrane protein 7 cfa
CANINE_2:CFAAFFX.6819.1.S1_S_AT similar to palmitoylated membrane protein 7 cfa
DROSOPHILA_2:1633935_AT skiff dm
DROSGENOME1:146984_AT skiff dm
DROSGENOME1:146983_AT skiff dm
CHICKEN:GGA.11909.1.S1_S_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) gga
CHICKEN:GGAAFFX.22240.2.S1_S_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) gga
HU35KSUBC:RC_AA009593_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
U133_X3P:HS2.350684.3.S1_3P_A_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
U133_X3P:HS.297946.0.A1_3P_X_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
U133_X3P:HS.297946.0.A1_3P_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
U133_X3P:HS.197672.0.A1_3P_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
U133_X3P:HS.103296.0.S1_3P_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133_PLUS_2:1564308_A_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133_PLUS_2:237495_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133B:237495_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133_PLUS_2:238451_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133B:238451_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133_PLUS_2:238778_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U133B:238778_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U95B:58057_R_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U95E:69410_AT Membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HG-U95D:72034_AT Membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
HU35KSUBC:RC_H72934_AT Membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) hs
RAE230B:1394924_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (predicted) rn
RAT230_2:1394924_AT membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85504 Hypothetical protein Y55B1BR.4 [Caenorhabditis elegans] ref|NP_497201.1| Y55B1BR.4 [Caenorhabditis elegans] 0.0
blast CAE69169 Hypothetical protein CBG15201 [Caenorhabditis briggsae] 0.0
blast AAK85504 Hypothetical protein Y55B1BR.4 [Caenorhabditis elegans] ref|NP_497201.1| Y55B1BR.4 [Caenorhabditis elegans] 1.0E-124
blast CAE69169 Hypothetical protein CBG15201 [Caenorhabditis briggsae] 1.0E-104
blast AAK85504 Hypothetical protein Y55B1BR.4 [Caenorhabditis elegans] ref|NP_497201.1| Y55B1BR.4 [Caenorhabditis elegans] 1.0E-87
blast CAE69169 Hypothetical protein CBG15201 [Caenorhabditis briggsae] 2.0E-77
blast XP_392140 PREDICTED: similar to GA15582-PA [Apis mellifera] 1.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.3E-11
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.6E-21
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.6E-21
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.8E-18
Sequence
Target Sequence 
>C. ELEGANS:176530_AT
tttacaaacgctattccgcacacgagtaggccgcagagaccaaatgaatcggatggtgtc
aactattatttcacgtcgcgttcagaaatggagcgaatgattgaacgaaaagaaatgctc
gaatacggagaatttcgcgataatttatacggaaccgcactgaaatctgtcagaaaagcc
agcgaaaagggcaccgtgctcctgacaccacatccgcttgcaattgagaatatccgtaca
tgggaattcgcgccgattgtgatttttgtgcaaccgcccgagtttggcgagtttaagcac
acccgagaagtctaccgctcccaaacgacacgttcccactcggcagcctcatcctcaaac
atttcccagaataccgctgcaacgagtgcggcgcgagcattttccgacgtcgaaatccgt
caaattatcgataattcggcacaaatggagcaaaagtatcgtggttattgtgatgcgatt
attcgaaatgttgatctagatactactatgaatgagctcactggactcatttatcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACAAACGCTATTCCGCACACGA 84 673 1189 Antisense
TGTCAACTATTATTTCACGTCGCGT 98 559 1245 Antisense
TACGGAACCGCACTGAAATCTGTCA 176 647 1336 Antisense
AGCCAGCGAAAAGGGCACCGTGCTC 392 83 1365 Antisense
ACACCACATCCGCTTGCAATTGAGA 472 109 1393 Antisense
ATTCGCGCCGATTGTGATTTTTGTG 432 9 1434 Antisense
TGTGCAACCGCCCGAGTTTGGCGAG 56 547 1455 Antisense
TTGGCGAGTTTAAGCACACCCGAGA 492 707 1472 Antisense
CATTTCCCAGAATACCGCTGCAACG 403 215 1548 Antisense
AACGAGTGCGGCGCGAGCATTTTCC 634 143 1569 Antisense
AGCTCACTGGACTCATTTATCAACT 402 79 1703 Antisense
Sequence Source Affymetrix Proprietary Database