[Home] | [Total List]

[176528_s_at]

Description Y55B1BR.2 /REP_DB=WormBase Gene ID /WP=CE25478 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 147.9
(-3)
P 		173.8
(1.2)
P 		184.6
(3)
P 		173
(1.1)
P 		37
B 155.9
(-2.6)
P 		153.9
(-2.8)
P 		151.1
(-3)
P 		218.6
(3)
P 		68
C 176.1
(-3)
P 		176.9
(-2.8)
P 		193.5
(1.4)
P 		199.7
(3)
P 		24
avr 160
(-3) 		168.2
(-1.7) 		176.4
(-0.3) 		197.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 171
(3)
P 		151
(1.7)
P 		89.2
(-2.3)
P 		79.2
(-3)
P 		146.8
(1.4)
P 		146
(1.4)
P 		92
B 176.1
(2.5)
P 		144.4
(-0.1)
P 		143.5
(-0.2)
P 		182.6
(3)
P 		137.9
(-0.7)
P 		109.2
(-3)
P 		73
C 189.6
(3)
P 		159.5
(1.3)
P 		91
(-2.5)
P 		95.9
(-2.2)
P 		176.6
(2.3)
P 		82
(-3)
P 		108
avr 178.9
(3) 		151.6
(0.7) 		107.9
(-3) 		119.2
(-2) 		153.8
(0.9) 		112.4
(-2.6) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 53.8
(3)
P 		37.7
(-0.4)
P 		48.3
(1.8)
P 		25.3
(-3)
P 		29
B 49.7
(3)
P 		38
(-1.8)
P 		35
(-3)
P 		46.6
(1.7)
P 		15
C 58.3
(1.4)
P 		50.9
(0.1)
P 		67.5
(3)
P 		33.7
(-3)
P 		34
avr 53.9
(3) 		42.2
(-0.8) 		50.3
(1.8) 		35.2
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 31.5
(-0.9)
P 		53.7
(3)
P 		19.4
(-3)
P 		20.1
(-2.9)
P 		44.3
(1.4)
P 		35.5
(-0.2)
P 		34
B 61.3
(3)
P 		48.1
(0)
P 		34.8
(-3)
P 		48.4
(0.1)
P 		56
(1.8)
P 		40.7
(-1.7)
P 		27
C 70.3
(3)
P 		48.7
(0.5)
P 		23.2
(-2.5)
P 		19.3
(-3)
P 		57.2
(1.5)
P 		27.5
(-2)
P 		51
avr 54.4
(3) 		50.2
(2.1) 		25.8
(-3) 		29.3
(-2.3) 		52.5
(2.6) 		34.6
(-1.2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176528_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8275
Sequence Type Exemplar sequence
Representative Public ID Y55B1BR.2 NCBI
Target Description Y55B1BR.2 /REP_DB=WormBase Gene ID /WP=CE25478 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064798 NCBI Caenorhabditis elegans Y55B1BR.2 (Y55B1BR.2) mRNA, complete cds. 11/11 None
SNAP00000040174 ENSEMBL cdna:SNAP chromosome:CEL140:III:434771:439829:1 11/11 None
GENEFINDER00000040187 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:434910:439829:1 11/11 None
Y55B1BR.2 ENSEMBL cdna:known chromosome:CEL140:III:434910:440135:1 gene:Y55B1BR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:434909-439829(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1BR.2
Entrez Gene 175203 Entrez gene
SwissProt Q95XW7 EMBL-EBI
WormBase CE25478 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85502 Hypothetical protein Y55B1BR.2 [Caenorhabditis elegans] ref|NP_497199.1| Y55B1BR.2 [Caenorhabditis elegans] 0.0
blast CAE69579 Hypothetical protein CBG15796 [Caenorhabditis briggsae] 1.0E-118
blast AAK85501 Hypothetical protein Y55B1BR.1 [Caenorhabditis elegans] ref|NP_497200.1| Y55B1BR.1 [Caenorhabditis elegans] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:176528_S_AT
gcgagaagtctccgaatccatcgacattcgaccggtgtcccgtgcatccgactcctcgtc
agttcattctcagcatctaacagtccccacaaacaaagcggtgacgtcagtggctcacgg
gacccccaaaccatccccgtccgccggatcgacaccatctggtccaactggggcacctgt
aatcccatggatcgccagcattcaggcttgtcagaatatggtctcaatgccccaaattgt
ctacgatgcctacaaatcgcagctcaaaactgccaacgggttgatgttggccagtagata
ttgggaagactcgaaaactctgtcaaatattatcgattcaggaacttttgtcaaagacgt
tgaatctatcgtcggaaaatccatctcaatggacatgcaattcgccgatcttgccacatt
tgtgctcaccgccgtcggaagcctgaaggccgagtacgaggaggagcagaagcagccggc
aaagccaattctggcaaaagtcaagaagggcctggacttggcaatcaggacgggaacttt
tcattctgataggccacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGAAGTCTCCGAATCCATCGAC 653 289 1620 Antisense
AATCCATCGACATTCGACCGGTGTC 666 165 1634 Antisense
TCGTCAGTTCATTCTCAGCATCTAA 364 605 1675 Antisense
AAAGCGGTGACGTCAGTGGCTCACG 42 125 1714 Antisense
AACTGGGGCACCTGTAATCCCATGG 339 139 1785 Antisense
GATCGCCAGCATTCAGGCTTGTCAG 259 417 1809 Antisense
ATGCCCCAAATTGTCTACGATGCCT 439 39 1846 Antisense
GGACATGCAATTCGCCGATCTTGCC 521 525 2010 Antisense
CGCCGTCGGAAGCCTGAAGGCCGAG 515 235 2049 Antisense
GCAGCCGGCAAAGCCAATTCTGGCA 120 315 2091 Antisense
ACTTTTCATTCTGATAGGCCACCTC 401 103 2155 Antisense
Sequence Source Affymetrix Proprietary Database