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[176527_at]

Description Y46E12BL.E /REP_DB=WormBase Gene ID /WP=CE26539 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 11      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 59.5
(-3)
A 		126.5
(-1.2)
A 		100.1
(-1.9)
A 		285.7
(3)
M 		226
B 117.2
(1.4)
A 		72.1
(-3)
A 		133.6
(3)
A 		115
(1.2)
A 		62
C 95.1
(-3)
A 		119.2
(-2)
A 		103.4
(-2.7)
A 		242.1
(3)
P 		147
avr 90.6
(-3) 		105.9
(-2.3) 		112.4
(-1.9) 		214.3
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 62.6
(2)
A 		69.6
(2.7)
A 		71.4
(2.8)
A 		19.9
(-2)
A 		73.1
(3)
A 		8.8
(-3)
A 		64
B 70.7
(-1.4)
A 		125.8
(3)
A 		58.3
(-2.4)
A 		54.6
(-2.7)
A 		50.5
(-3)
A 		75.8
(-1)
A 		75
C 27.7
(-1.9)
A 		79.4
(3)
A 		73.7
(2.4)
A 		79.8
(3)
A 		15.7
(-3)
A 		59
(1.1)
A 		64
avr 53.7
(-2) 		91.6
(3) 		67.8
(-0.2) 		51.4
(-2.3) 		46.4
(-3) 		47.9
(-2.8) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21.7
(-3)
A 		27.5
(-1.3)
A 		26.2
(-1.7)
A 		41.8
(3)
M 		20
B 37.4
(3)
A 		17.8
(-3)
A 		31
(1)
A 		24.5
(-0.9)
A 		20
C 31.5
(-3)
A 		34.3
(-1.2)
A 		36
(-0.1)
A 		40.8
(3)
P 		9
avr 30.2
(-0.6) 		26.5
(-3) 		31.1
(0) 		35.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.5
(-0.5)
A 		24.7
(3)
A 		15.5
(0.5)
A 		5
(-2.3)
A 		22.1
(2.3)
A 		2.2
(-3)
A 		23
B 24.6
(-0.7)
A 		41.9
(3)
A 		14.1
(-3)
A 		14.5
(-2.9)
A 		20.5
(-1.6)
A 		28.3
(0.1)
A 		28
C 10.3
(-1.4)
A 		24.2
(3)
A 		18.8
(1.3)
A 		16
(0.4)
A 		5.1
(-3)
A 		19.7
(1.6)
A 		19
avr 15.5
(-1.8) 		30.3
(3) 		16.1
(-1.6) 		11.8
(-3) 		15.9
(-1.7) 		16.7
(-1.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19081
Sequence Type Exemplar sequence
Representative Public ID Y46E12BL.E NCBI
Target Description Y46E12BL.E /REP_DB=WormBase Gene ID /WP=CE26539 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y46E12BL.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y46E12BL.E Y46E12BL.E /REP_DB=WormBase Gene ID /WP=CE26539 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064918 11/11 Negative Strand Matching Probes A 
SNAP00000018038 11/11 Negative Strand Matching Probes None
GENEFINDER00000018042 11/11 Negative Strand Matching Probes None
Y46E12BL.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15235586-15235811(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176527_AT
aaatcagttgtccaactgctccgctcgccggatgcaacccgttatccgtcgcagtaaccg
gatcggtaagaaccgcccggatcacacgacgagccatcgtacggacccacggcttgtcgt
gagccgccagagcagccacagagacgagcatattccgcgtattggcgctggaccagacgg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAGTTGTCCAACTGCTCCGCT 675 117 21 Antisense
CCGTTATCCGTCGCAGTAACCGGAT 68 1 59 Antisense
TCCGTCGCAGTAACCGGATCGGTAA 399 589 65 Antisense
GGATCGGTAAGAACCGCCCGGATCA 88 511 80 Antisense
ATCGGTAAGAACCGCCCGGATCACA 31 25 82 Antisense
ATCACACGACGAGCCATCGTACGGA 19 27 101 Antisense
CGCCAGAGCAGCCACAGAGACGAGC 326 255 145 Antisense
GCCACAGAGACGAGCATATTCCGCG 164 279 155 Antisense
GACGAGCATATTCCGCGTATTGGCG 71 379 163 Antisense
TATTCCGCGTATTGGCGCTGGACCA 253 661 171 Antisense
GCGTATTGGCGCTGGACCAGACGGA 14 291 177 Antisense
Sequence Source Affymetrix Proprietary Database