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[176526_s_at]

Description Y39H10A.6 /REP_DB=WormBase Gene ID /WP=CE26075 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 03      6grp_total > 08      4grp_total > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 184.8
(0.4)
P 		189.6
(0.8)
M 		143.1
(-3)
P 		215.9
(3)
P 		73
B 162.1
(0.2)
P 		131.1
(-3)
P 		140.1
(-2.1)
P 		188.9
(3)
P 		58
C 138.3
(-1.3)
P 		147.8
(-0)
P 		125.7
(-3)
P 		170.4
(3)
P 		45
avr 161.7
(-0.2) 		156.2
(-0.8) 		136.3
(-3) 		191.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 175.1
(3)
P 		86.3
(-2.4)
P 		91.8
(-2)
P 		81.4
(-2.7)
P 		93.2
(-1.9)
P 		75.6
(-3)
A 		100
B 150.9
(3)
P 		109.5
(-1.5)
M 		133.5
(1.1)
P 		115.1
(-0.9)
P 		95.5
(-3)
P 		118.3
(-0.5)
P 		55
C 103.3
(1)
P 		81.9
(-0.7)
A 		129.6
(3)
M 		79.3
(-0.9)
P 		75.3
(-1.2)
P 		52
(-3)
P 		78
avr 143.1
(3) 		92.6
(-2) 		118.3
(0.6) 		91.9
(-2) 		88
(-2.4) 		82
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 67.3
(3)
P 		41.2
(-1.4)
M 		37.4
(-2)
P 		31.6
(-3)
P 		36
B 51.7
(3)
P 		32.4
(-3)
P 		32.5
(-3)
P 		40.3
(-0.5)
P 		19
C 45.8
(3)
P 		42.5
(1.8)
P 		43.8
(2.3)
P 		28.7
(-3)
P 		17
avr 54.9
(3) 		38.7
(-1.5) 		37.9
(-1.8) 		33.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 32.3
(3)
P 		30.7
(2.3)
P 		20
(-2.3)
P 		20.6
(-2.1)
P 		28.1
(1.2)
P 		18.4
(-3)
A 		14
B 52.5
(3)
P 		36.5
(-1.4)
M 		32.4
(-2.5)
P 		30.5
(-3)
P 		38.8
(-0.7)
P 		44.1
(0.7)
P 		22
C 38.3
(3)
P 		25
(-0.6)
A 		33
(1.6)
M 		15.9
(-3)
P 		24.4
(-0.7)
P 		17.4
(-2.6)
P 		22
avr 41
(3) 		30.7
(-0.3) 		28.5
(-1) 		22.3
(-3) 		30.4
(-0.4) 		26.6
(-1.6) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176526_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15170
Sequence Type Exemplar sequence
Representative Public ID Y39H10A.6 NCBI
Target Description Y39H10A.6 /REP_DB=WormBase Gene ID /WP=CE26075 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071638 NCBI Caenorhabditis elegans Y39H10A.6 (Y39H10A.6) mRNA, complete cds. 11/11 None
SNAP00000040119 ENSEMBL cdna:SNAP chromosome:CEL140:V:3750035:3755610:-1 11/11 None
Y39H10A.6 ENSEMBL cdna:known chromosome:CEL140:V:3749309:3756758:-1 gene:Y39H10A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040128 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3750034-3755610(-) 98.52 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39H10A.6
Entrez Gene 178791 Entrez gene
SwissProt Q965W8 EMBL-EBI
WormBase CE32248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84605 Hypothetical protein Y39H10A.6 [Caenorhabditis elegans] ref|NP_504039.3| Y39H10A.6 [Caenorhabditis elegans] 0.0
blast CAE62559 Hypothetical protein CBG06669 [Caenorhabditis briggsae] 0.0
blast CAE62559 Hypothetical protein CBG06669 [Caenorhabditis briggsae] 1.0E-166
blast XP_784365 PREDICTED: similar to WD-repeat protein 26 [Strongylocentrotus purpuratus] 8.0E-39
blast EAA11448 ENSANGP00000005867 [Anopheles gambiae str. PEST] ref|XP_316089.2| ENSANGP00000005867 [Anopheles gambiae str. PEST] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.6E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.6E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-11
Sequence
Target Sequence 
>C. ELEGANS:176526_S_AT
tgattcgaatcttctcgggagcctgtcagcgggaggagttctcgcgttatcaaattcatt
catcgtttggaggagttcatcagaatttcattgctacaggctcgattggaagttcgtttt
ttttatttcacttattcagcagccaaggaagaaaccgacgaatcgctacgcgaaacgaca
aaaccaagcgaaaacacggccgcgtcgtcatctggagtgttcaggacagtcgtccccgct
actcgctcgtcggccatcgaggccacgtgaacgctgtcgcctggaacccggcggatccga
caatgctggtgagctgcggtgccgacgcgacgatccgcgtctggtcgttggatcgatccg
agaccgctgactactcggaaattgtgccacggcggattccgagacacttgaagcaacaga
agaagtcgtcgtcgtccatggtacaatgcgacatgatggaaccgtcgacgagcaagaacg
gcggcggcacatatgagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCGAATCTTCTCGGGAGCCTG 408 563 1484 Antisense
GAGCCTGTCAGCGGGAGGAGTTCTC 574 385 1502 Antisense
GGAGTTCTCGCGTTATCAAATTCAT 13 519 1518 Antisense
GAATTTCATTGCTACAGGCTCGATT 497 325 1566 Antisense
GAAACCGACGAATCGCTACGCGAAA 441 351 1634 Antisense
GGCGGATCCGACAATGCTGGTGAGC 453 541 1773 Antisense
CGACGCGACGATCCGCGTCTGGTCG 575 251 1806 Antisense
GTCGTTGGATCGATCCGAGACCGCT 358 471 1827 Antisense
GACTACTCGGAAATTGTGCCACGGC 443 371 1852 Antisense
CGTCGTCGTCCATGGTACAATGCGA 493 243 1910 Antisense
AGAACGGCGGCGGCACATATGAGCT 585 71 1958 Antisense
Sequence Source Affymetrix Proprietary Database