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[176525_s_at]

Description Y46E12BL.C /REP_DB=WormBase Gene ID /WP=CE26537 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 91      6grp_total > 47      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 344.5
(0.6)
P 		353.2
(1.4)
P 		370.3
(3)
P 		305.9
(-3)
P 		64
B 406.7
(3)
P 		375.9
(1.4)
P 		341.7
(-0.4)
P 		293.2
(-3)
P 		114
C 358.7
(3)
P 		258.7
(-2.4)
P 		334.4
(1.7)
P 		247.6
(-3)
P 		111
avr 370
(3) 		329.3
(0.2) 		348.8
(1.6) 		282.2
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 276.7
(1.8)
P 		254
(1)
P 		139.2
(-3)
P 		167.6
(-2)
P 		158.8
(-2.3)
P 		309.5
(3)
P 		170
B 307.3
(3)
P 		287.5
(2.3)
P 		209.7
(-0.4)
P 		132.9
(-3)
P 		194.3
(-0.9)
P 		299.8
(2.7)
P 		174
C 188
(-1.2)
P 		227.3
(0.3)
P 		245.9
(1)
P 		142
(-3)
P 		219.5
(-0)
P 		297.5
(3)
P 		156
avr 257.3
(1.3) 		256.3
(1.2) 		198.3
(-1) 		147.5
(-3) 		190.9
(-1.3) 		302.3
(3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 125.4
(3)
P 		76.7
(-0.6)
P 		96.8
(0.9)
P 		44.8
(-3)
P 		81
B 129.7
(3)
P 		92.8
(-0.3)
P 		79.2
(-1.5)
P 		62.5
(-3)
P 		67
C 118.7
(3)
P 		74.4
(-0.5)
P 		116.5
(2.8)
P 		41.7
(-3)
P 		77
avr 124.6
(3) 		81.3
(-0.5) 		97.5
(0.8) 		49.7
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 51
(-0.9)
P 		90.3
(3)
P 		30.3
(-3)
P 		42.5
(-1.8)
P 		47.9
(-1.2)
P 		75.3
(1.5)
P 		60
B 106.9
(2.6)
P 		95.7
(1.7)
P 		50.9
(-1.8)
P 		35.2
(-3)
P 		78.9
(0.4)
P 		111.8
(3)
P 		77
C 69.7
(0.5)
P 		69.4
(0.4)
P 		62.6
(-0.1)
P 		28.6
(-3)
P 		71
(0.6)
P 		99.6
(3)
P 		71
avr 75.9
(1) 		85.1
(2) 		47.9
(-1.8) 		35.4
(-3) 		65.9
(0) 		95.6
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176525_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19056
Sequence Type Exemplar sequence
Representative Public ID Y46E12BL.C NCBI
Target Description Y46E12BL.C /REP_DB=WormBase Gene ID /WP=CE26537 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064918 NCBI Caenorhabditis elegans Y46E12BL.2 (Y46E12BL.2) mRNA, complete cds. 11/11 None
SNAP00000018038 ENSEMBL cdna:SNAP chromosome:CEL140:II:15233052:15248785:1 11/11 None
GENEFINDER00000018042 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15233052:15244648:1 11/11 None
Y46E12BL.2 ENSEMBL cdna:known chromosome:CEL140:II:15233043:15244821:1 gene:Y46E12BL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15230534-15244645(+) 99.5 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46E12BL.2
Entrez Gene 266878 Entrez gene
SwissProt Q965N8 EMBL-EBI
WormBase CE27472 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:267044_AT expressed protein at
ATGENOME1:14982_AT expressed protein at
ATGENOME1:14707_S_AT expressed protein at
CANINE:1584149_AT similar to Protein KIAA0690 cfa
CANINE_2:CFA.11836.1.A1_AT similar to Protein KIAA0690 cfa
CANINE_2:CFA.17708.1.S1_S_AT similar to Protein KIAA0690 cfa
CANINE_2:CFAAFFX.14279.1.S1_S_AT similar to Protein KIAA0690 cfa
DROSOPHILA_2:1640382_AT dm
DROSGENOME1:154451_AT dm
CHICKEN:GGA.13916.1.S1_AT similar to KIAA0690 gga
CHICKEN:GGAAFFX.12252.1.S1_AT similar to KIAA0690 gga
HG-U133_PLUS_2:216913_S_AT KIAA0690 hs
HG-U133A_2:216913_S_AT KIAA0690 hs
HG-U133A:216913_S_AT KIAA0690 hs
HU35KSUBA:AA126812_AT KIAA0690 hs
HU35KSUBA:HUM_ALU_AT KIAA0690 hs
HU35KSUBB:HUM_ALU_AT KIAA0690 hs
HU35KSUBC:HUM_ALU_AT KIAA0690 hs
HU35KSUBD:HUM_ALU_AT KIAA0690 hs
HUGENEFL:HUM_ALU_AT KIAA0690 hs
HC-G110:HUM_ALU_AT KIAA0690 hs
HU35KSUBC:RC_AA460229_AT KIAA0690 hs
U133_X3P:HS2.434138.1.S1_3P_X_AT KIAA0690 hs
U133_X3P:HS.60103.2.S1_3P_A_AT KIAA0690 hs
U133_X3P:HS.60103.1.S1_3P_X_AT KIAA0690 hs
U133_X3P:HS.60103.1.S1_3P_A_AT KIAA0690 hs
U133_X3P:1559126_3P_AT KIAA0690 hs
HG-U133_PLUS_2:1559126_AT KIAA0690 hs
HG-U133_PLUS_2:1559127_X_AT KIAA0690 hs
HG-U133A_2:216360_X_AT KIAA0690 hs
HG-U133_PLUS_2:216360_X_AT KIAA0690 hs
HG-U133A:216360_X_AT KIAA0690 hs
HG-U95AV2:36520_AT KIAA0690 hs
HG-U133_PLUS_2:216909_AT KIAA0690 hs
HG-U133A_2:216909_AT KIAA0690 hs
HG-U133A:216909_AT KIAA0690 hs
MU11KSUBB:W12251_AT expressed sequence AA408556 mm
MG-U74AV2:160974_AT expressed sequence AA408556 mm
MG-U74BV2:164957_I_AT expressed sequence AA408556 mm
MG-U74BV2:164484_F_AT expressed sequence AA408556 mm
MG-U74BV2:164395_R_AT expressed sequence AA408556 mm
MG-U74BV2:164359_I_AT expressed sequence AA408556 mm
MOE430A:1434239_AT expressed sequence AA408556 mm
MOUSE430A_2:1434239_AT expressed sequence AA408556 mm
MOUSE430_2:1434239_AT expressed sequence AA408556 mm
MOE430A:1456672_AT Expressed sequence AA408556 (AA408556), mRNA mm
MOUSE430A_2:1456672_AT Expressed sequence AA408556 (AA408556), mRNA mm
MOUSE430_2:1456672_AT Expressed sequence AA408556 (AA408556), mRNA mm
MG-U74AV2:95385_AT Expressed sequence AA408556 (AA408556), mRNA mm
MU19KSUBB:TC32546_AT Expressed sequence AA408556 (AA408556), mRNA mm
MU19KSUBC:TC39508_AT Expressed sequence AA408556 (AA408556), mRNA mm
MU11KSUBA:AA408518_RC_AT Expressed sequence AA408556 (AA408556), mRNA mm
YEAST_2:1774757_AT Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; contains HEAT-repeats Sc
Protein Similarities
Method ID Description E-Value
blast AAK68489 Hypothetical protein Y46E12BL.2 [Caenorhabditis elegans] ref|NP_497319.1| Y46E12BL.2 [Caenorhabditis elegans] 0.0
blast CAE73243 Hypothetical protein CBG20655 [Caenorhabditis briggsae] 0.0
blast AAH84614 LOC495282 protein [Xenopus laevis] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:176525_S_AT
gaatccgatggagatgtccccatggatcttctcgattcttctagaatgatggatcagatc
accacgatgaatccggcgattcttgagaagagaaagaagaaggcgttggagagacggcag
aaggttgaagctggattccagttctccaaggatggaaagatgattgtgcttggagatgat
gaggaggatgaggataagaagcagatcgggaagagaaagatgcgaagtggatatgatggt
ctgggagatgatgatgaggatgatgaggatggtccgacgaaggggaagaagcgggttaag
gagaatagtgattcggaagatgagattctttccgatgatgatgatgatgatgatgagaag
gatgccaagacttttgtcagcagagcagctccgtcgtatggtggaaagggtatctataga
gatacatccggaaaatcacaagttggaagctccgtgggagccaagcgtcagcagaagcaa
aagcccaacaagccgaagcaacagcagaagagtgttcagccgtacgcctacgttccacta
cgcaataagaccgccaagcaggatgttcgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCGATGGAGATGTCCCCATGG 69 329 3964 Antisense
CATGGATCTTCTCGATTCTTCTAGA 623 209 3984 Antisense
AGATCACCACGATGAATCCGGCGAT 177 67 4019 Antisense
AGCTGGATTCCAGTTCTCCAAGGAT 128 77 4092 Antisense
GACTTTTGTCAGCAGAGCAGCTCCG 698 371 4332 Antisense
AGCAGCTCCGTCGTATGGTGGAAAG 449 77 4347 Antisense
GGGAGCCAAGCGTCAGCAGAAGCAA 136 495 4419 Antisense
AAGCCCAACAAGCCGAAGCAACAGC 674 149 4444 Antisense
GCAGAAGAGTGTTCAGCCGTACGCC 283 311 4467 Antisense
TCCACTACGCAATAAGACCGCCAAG 211 589 4497 Antisense
ACCGCCAAGCAGGATGTTCGTCAAA 129 89 4513 Antisense
Sequence Source Affymetrix Proprietary Database