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[176524_at]

Description C35D10.7A /REP_DB=WormBase Gene ID /WP=CE26430 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 165.9
(-1.6)
P 		137.1
(-3)
P 		168.4
(-1.4)
P 		257.4
(3)
P 		120
B 242
(1.6)
P 		166.1
(-3)
P 		227.7
(0.7)
P 		264.7
(3)
P 		99
C 244.4
(1.1)
P 		156.4
(-3)
P 		163
(-2.7)
P 		286
(3)
P 		130
avr 217.4
(0.3) 		153.2
(-3) 		186.4
(-1.3) 		269.4
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 218.2
(-3)
P 		222.7
(-2.9)
P 		278
(-1.3)
P 		315.6
(-0.2)
P 		275.1
(-1.4)
P 		426.6
(3)
P 		208
B 200
(-3)
P 		251.2
(-1.9)
P 		284.2
(-1.2)
P 		292
(-1)
P 		371.3
(0.6)
P 		482
(3)
P 		282
C 206.2
(-3)
P 		211.3
(-2.9)
P 		217.4
(-2.7)
P 		271.1
(-1.4)
P 		364.3
(1)
P 		445.5
(3)
P 		239
avr 208.1
(-3) 		228.4
(-2.5) 		259.9
(-1.7) 		292.9
(-0.9) 		336.9
(0.2) 		451.4
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 60.4
(3)
P 		29.8
(-3)
P 		44
(-0.2)
P 		37.7
(-1.5)
P 		31
B 77.2
(3)
P 		41
(-3)
P 		52.8
(-1)
P 		56.4
(-0.4)
P 		36
C 80.9
(3)
P 		45
(-3)
P 		56.8
(-1)
P 		48.2
(-2.5)
P 		36
avr 72.8
(3) 		38.6
(-3) 		51.2
(-0.8) 		47.4
(-1.5) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 40.2
(-3)
P 		79.2
(0.7)
P 		60.5
(-1.1)
P 		80
(0.7)
P 		83
(1)
P 		103.9
(3)
P 		64
B 69.6
(-3)
P 		83.6
(-2.2)
P 		69
(-3)
P 		77.3
(-2.6)
P 		150.9
(1.4)
P 		179.7
(3)
P 		111
C 76.4
(-1.6)
P 		64.5
(-2.4)
P 		55.3
(-2.9)
P 		54.5
(-3)
P 		117.9
(1)
P 		149.1
(3)
P 		95
avr 62.1
(-3) 		75.8
(-2) 		61.6
(-3) 		70.6
(-2.3) 		117.3
(1) 		144.2
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6780
Sequence Type Exemplar sequence
Representative Public ID C35D10.7A NCBI
Target Description C35D10.7A /REP_DB=WormBase Gene ID /WP=CE26430 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065608(11), NM_065609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065608 NCBI Caenorhabditis elegans C35D10.7a (C35D10.7) mRNA, complete cds. 11/11 A 
NM_065609 NCBI Caenorhabditis elegans C35D10.7b (C35D10.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000029570 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4852286:4860647:1 9/11 None
C35D10.7a ENSEMBL cdna:known chromosome:CEL140:III:4856154:4859190:1 gene:C35D10.7 11/11 A 
C35D10.7b ENSEMBL cdna:known chromosome:CEL140:III:4856820:4859098:1 gene:C35D10.7 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029543 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4856163-4859098(+) 100.0 100.0
Public Domain and Genome References
Ensembl C35D10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498009 C35D10.7a [Caenorhabditis elegans] gb|AAN63435.1| Hypothetical protein C35D10.7a [Caenorhabditis elegans] 0.0
blast NP_498010 C35D10.7b [Caenorhabditis elegans] gb|AAN63436.1| Hypothetical protein C35D10.7b [Caenorhabditis elegans] 0.0
blast S72568 hypothetical protein C35D10.7 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002182 EMBL-EBI NB-ARC domain 1.1E-38
Pfam IPR002182 EMBL-EBI NB-ARC domain 2.9E-87
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.1E-110
Pfam IPR001315 EMBL-EBI CARD interaction domain 8.6E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029570 6 552-574,587-609,614-636,787-809,1360-1379,1386-1408
Sequence
Target Sequence 
>C. ELEGANS:176524_AT
gagcgacacgctatcagtatgattccaaaagtgaaagatgtcccgagtgtggtgcaactg
gcgaaagagtgtaagatgtggtccgcatttgaacgaattctcaagcaatacaattttgag
ccgctgaaagtttttgaagaattgcaaaaaatgcttgaaaaggattattttctaccgaaa
ggtaagatcttctgccaattcttgctcaatgtcgcccaactgttttcctatgatgtcgtt
aagaatgaatggtcttgcatcaaacaaatcgacgggacgttgttttcgggagtcccattt
gatcgcgatggaaatctactcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGACACGCTATCAGTATGATTC 157 387 1051 Antisense
AGATGTCCCGAGTGTGGTGCAACTG 615 65 1086 Antisense
GAAAGAGTGTAAGATGTGGTCCGCA 411 359 1113 Antisense
GTGGTCCGCATTTGAACGAATTCTC 488 489 1128 Antisense
AGCAATACAATTTTGAGCCGCTGAA 197 75 1154 Antisense
GAAAGGTAAGATCTTCTGCCAATTC 250 355 1227 Antisense
TCTGCCAATTCTTGCTCAATGTCGC 123 609 1241 Antisense
GCCCAACTGTTTTCCTATGATGTCG 384 287 1264 Antisense
GAATGGTCTTGCATCAAACAAATCG 155 333 1297 Antisense
TCGGGAGTCCCATTTGATCGCGATG 686 605 1336 Antisense
GATCGCGATGGAAATCTACTCCCCA 465 415 1351 Antisense
Sequence Source Affymetrix Proprietary Database