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[176522_at]

Description Y46E12BM.A /REP_DB=WormBase Gene ID /WP=CE26616 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 11      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 7.6
(-1.7)
A
16.4
(3)
A
5.1
(-3)
A
9.1
(-0.9)
A
11
B 8.7
(-2.1)
A
2.8
(-3)
A
5.6
(-2.6)
A
43.2
(3)
A
40
C 29.2
(3)
A
2.9
(-3)
A
6.4
(-2.2)
A
15.3
(-0.2)
A
26
avr 15.2
(0.4)
7.4
(-2.4)
5.7
(-3)
22.5
(3)
17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.6
(-3)
A
4.5
(-0)
A
5.1
(0.9)
A
2.6
(-3)
A
6.4
(3)
A
2.8
(-2.7)
A
4
B 6.2
(2.8)
A
3.4
(-1.6)
A
2.9
(-2.4)
A
2.5
(-3)
A
2.6
(-2.8)
A
6.3
(3)
A
4
C 6.6
(-1.9)
A
26.2
(3)
A
10.8
(-0.9)
A
6.1
(-2.1)
A
2.4
(-3)
A
4.3
(-2.5)
A
24
avr 5.1
(-1.9)
11.4
(3)
6.3
(-1)
3.7
(-3)
3.8
(-2.9)
4.5
(-2.4)
8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.8
(0.9)
A
3.6
(3)
A
1.3
(-3)
A
1.3
(-3)
A
2
B 2.8
(-1.5)
A
0.7
(-3)
A
1.3
(-2.6)
A
9.2
(3)
A
9
C 9.7
(3)
A
0.8
(-3)
A
2.2
(-2.1)
A
2.6
(-1.8)
A
9
avr 5.1
(3)
1.7
(-2.8)
1.6
(-3)
4.4
(1.8)
4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A
1.6
(1.7)
A
1.1
(-0.4)
A
0.7
(-2.1)
A
1.9
(3)
A
0.7
(-2.1)
A
1
B 2.2
(2.6)
A
1.1
(-1.5)
A
0.7
(-3)
A
0.7
(-3)
A
1.1
(-1.5)
A
2.3
(3)
A
2
C 2.4
(-1.7)
A
8
(3)
A
2.8
(-1.3)
A
1.2
(-2.7)
A
0.8
(-3)
A
1.4
(-2.5)
A
7
avr 1.7
(-1.2)
3.6
(3)
1.5
(-1.7)
0.9
(-3)
1.3
(-2.1)
1.5
(-1.7)
3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19036
Sequence Type Exemplar sequence
Representative Public ID Y46E12BM.A NCBI
Target Description Y46E12BM.A /REP_DB=WormBase Gene ID /WP=CE26616 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
SNAP00000044138 ENSEMBL cdna:SNAP chromosome:CEL140:II:15216264:15217772:1 10/11 None
GENEFINDER00000044139 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15216300:15216528:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15216296-15216578(+) 94.68 100.0
Sequence
Target Sequence
>C. ELEGANS:176522_AT
tcgacacgacgcctgaaggatccgaagacgacgactacgatatggtgatgtacgacgagt
cgtcggcggatagctcgttctcggtgcccaccagcactgtgccatcatcggtcgctgaaa
cctatgagacgatggacacggacgccggattttcgacggatagtgaaatggaacggcttg
tcgagttgagatcaggt


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TCGACACGACGCCTGAAGGATCCGA 517 599 47 Antisense
GAAGGATCCGAAGACGACGACTACG 367 333 61 Antisense
GACGACGACTACGATATGGTGATGT 695 379 73 Antisense
GATATGGTGATGTACGACGAGTCGT 294 425 85 Antisense
CGAGTCGTCGGCGGATAGCTCGTTC 270 249 102 Antisense
CCATCATCGGTCGCTGAAACCTATG 509 269 148 Antisense
CGGTCGCTGAAACCTATGAGACGAT 80 245 155 Antisense
ATGAGACGATGGACACGGACGCCGG 576 43 170 Antisense
CACGGACGCCGGATTTTCGACGGAT 118 199 183 Antisense
GATAGTGAAATGGAACGGCTTGTCG 277 425 205 Antisense
ACGGCTTGTCGAGTTGAGATCAGGT 279 95 219 Antisense
Sequence Source Affymetrix Proprietary Database