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[176521_at]

Description Y46E12BL.D /REP_DB=WormBase Gene ID /WP=CE26538 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 01      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 5.3
(-3)
A 		9.6
(-2.6)
A 		63.6
(3)
A 		9.4
(-2.6)
A 		58
B 14.8
(-3)
A 		38.4
(3)
A 		27.6
(0.3)
A 		24.6
(-0.5)
A 		24
C 7.9
(-2.7)
A 		21.1
(-0.7)
A 		45.1
(3)
A 		5.8
(-3)
A 		39
avr 9.3
(-3) 		23
(-0.7) 		45.4
(3) 		13.3
(-2.3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.1
(-2.3)
A 		16.3
(-1.5)
A 		6.5
(-3)
A 		7.4
(-2.9)
A 		46.7
(3)
A 		7.2
(-2.9)
A 		40
B 5.4
(-2.8)
A 		49.5
(3)
A 		7.7
(-2.5)
A 		3.8
(-3)
A 		8.5
(-2.4)
A 		6.1
(-2.7)
A 		46
C 5.8
(-2.4)
A 		5.9
(-2.3)
A 		8.1
(-1.3)
A 		4.5
(-3)
A 		6.5
(-2)
A 		17
(3)
A 		13
avr 7.4
(-2.3) 		23.9
(3) 		7.4
(-2.3) 		5.2
(-3) 		20.6
(1.9) 		10.1
(-1.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.9
(-2.8)
A 		2.1
(-2.7)
A 		16.6
(3)
A 		1.4
(-3)
A 		15
B 4.7
(-3)
A 		9.5
(3)
A 		6.4
(-0.9)
A 		5.3
(-2.3)
A 		5
C 2.6
(-2.3)
A 		6.1
(-0.9)
A 		15.7
(3)
A 		1
(-3)
A 		15
avr 3.1
(-2.7) 		5.9
(-1.1) 		12.9
(3) 		2.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2
(-2.7)
A 		5.8
(-0.9)
A 		1.4
(-3)
A 		1.9
(-2.8)
A 		14.1
(3)
A 		1.7
(-2.9)
A 		13
B 1.9
(-2.7)
A 		16.5
(3)
A 		1.9
(-2.7)
A 		1
(-3)
A 		3.4
(-2.1)
A 		2.3
(-2.5)
A 		16
C 2.2
(-1.4)
A 		1.8
(-1.9)
A 		2.1
(-1.5)
A 		0.9
(-3)
A 		2.1
(-1.5)
A 		5.7
(3)
A 		5
avr 2
(-2.4) 		8
(3) 		1.8
(-2.6) 		1.3
(-3) 		6.5
(1.7) 		3.2
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19001
Sequence Type Exemplar sequence
Representative Public ID Y46E12BL.D NCBI
Target Description Y46E12BL.D /REP_DB=WormBase Gene ID /WP=CE26538 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y46E12BL.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y46E12BL.D Y46E12BL.D /REP_DB=WormBase Gene ID /WP=CE26538 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064918 11/11 Negative Strand Matching Probes A 
SNAP00000018038 11/11 Negative Strand Matching Probes None
GENEFINDER00000018042 11/11 Negative Strand Matching Probes None
Y46E12BL.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15241552-15244094(-) 92.57 100.0
Sequence
Target Sequence 
>C. ELEGANS:176521_AT
gactgtagtcaggatctgctcacggaattgttggagcatcacttcagggatcttctggca
caggacacgcatcagacgaatcgcgagaattcgaacagcggcacgtccttctccgatcca
ggagcacgcgaacgagatcatcttcgacgtggcgatcgtgttgaggattttaacctgctt
ctgagcgataatattcgctgcgacgaggcaagaccgagcaacatgcaacggaatgtctcc
agtggttttttgctcggcagagattgtggtgagctcgtagagcttcgaaagcaccggctc
cagagcagcggatggtgtgtcgattgtgggatcgtcgacgagatccaagatcttactaca
aatgaattgaatgcacttgctcgagttctgtcgggtgtgcacattgttatccttgtcgag
aagcagtatgatgttacggatgagcttctcggtgagatcggtgacttctttcatcgtatt
gcagccgtcgtaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGTAGTCAGGATCTGCTCACGG 698 375 1075 Antisense
GGAGCATCACTTCAGGGATCTTCTG 131 521 1107 Antisense
GATCTTCTGGCACAGGACACGCATC 56 421 1123 Antisense
GGAGCACGCGAACGAGATCATCTTC 286 521 1195 Antisense
ATCATCTTCGACGTGGCGATCGTGT 547 29 1211 Antisense
ATGTCTCCAGTGGTTTTTTGCTCGG 14 47 1307 Antisense
CACCGGCTCCAGAGCAGCGGATGGT 274 201 1366 Antisense
CACTTGCTCGAGTTCTGTCGGGTGT 299 195 1448 Antisense
GGGTGTGCACATTGTTATCCTTGTC 497 497 1467 Antisense
AGATCGGTGACTTCTTTCATCGTAT 49 67 1529 Antisense
TTCATCGTATTGCAGCCGTCGTAGA 257 685 1544 Antisense
Sequence Source Affymetrix Proprietary Database