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[176520_at]

Description Y39H10A.3 /REP_DB=WormBase Gene ID /WP=CE26073 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 81      6grp_total > 39      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 301.1
(2.8)
P 		256.6
(0.5)
P 		305.6
(3)
P 		188.3
(-3)
P 		117
B 317.7
(3)
P 		252.4
(-0.3)
P 		197.7
(-3)
P 		230
(-1.4)
P 		120
C 304.1
(3)
P 		260.2
(0.9)
P 		297.2
(2.7)
P 		176.2
(-3)
P 		128
avr 307.6
(3) 		256.4
(0.2) 		266.8
(0.8) 		198.2
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 320.1
(3)
P 		274.1
(0.7)
P 		199.8
(-3)
P 		244.2
(-0.8)
P 		255
(-0.2)
P 		306.3
(2.3)
P 		120
B 288.4
(2)
P 		249.4
(0)
P 		190.8
(-3)
P 		235.9
(-0.7)
P 		304.5
(2.9)
P 		307.1
(3)
P 		116
C 364.9
(3)
P 		205
(-1.6)
P 		227
(-0.9)
P 		154.8
(-3)
P 		327.3
(1.9)
P 		276.9
(0.5)
P 		210
avr 324.5
(3) 		242.8
(-1.1) 		205.9
(-3) 		211.6
(-2.7) 		295.6
(1.5) 		296.8
(1.6) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 109.6
(3)
P 		55.7
(-0.9)
P 		79.9
(0.8)
P 		27.6
(-3)
P 		82
B 101.3
(3)
P 		62.3
(-1.2)
P 		45.8
(-3)
P 		49
(-2.7)
P 		56
C 100.7
(2.8)
P 		74.8
(0.7)
P 		103.6
(3)
P 		29.7
(-3)
P 		74
avr 103.9
(3) 		64.3
(-0.5) 		76.4
(0.6) 		35.4
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 59
(-1.3)
P 		97.5
(3)
P 		43.5
(-3)
P 		61.9
(-1)
P 		76.9
(0.7)
P 		74.6
(0.5)
P 		54
B 100.4
(1.2)
P 		83
(-0.2)
P 		46.3
(-3)
P 		62.5
(-1.7)
P 		123.7
(3)
P 		114.5
(2.3)
P 		77
C 135.2
(3)
P 		62.6
(-1.2)
P 		57.8
(-1.5)
P 		31.1
(-3)
P 		105.9
(1.3)
P 		92.7
(0.6)
P 		104
avr 98.2
(2.5) 		81
(0.6) 		49.2
(-3) 		51.8
(-2.7) 		102.2
(3) 		93.9
(2.1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15058
Sequence Type Exemplar sequence
Representative Public ID Y39H10A.3 NCBI
Target Description Y39H10A.3 /REP_DB=WormBase Gene ID /WP=CE26073 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071637(11), NM_182367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071637 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-9) (mtm-9) mRNA, complete cds. 11/11 A 
NM_182367 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-9) (mtm-9) mRNA, complete cds. 11/11 None
SNAP00000040118 ENSEMBL cdna:SNAP chromosome:CEL140:V:3743393:3756682:1 11/11 None
GENEFINDER00000040126 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3743393:3750532:1 11/11 None
Y39H10A.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:3743389:3749084:1 gene:Y39H10A.3 11/11 None
Y39H10A.3b ENSEMBL cdna:known chromosome:CEL140:V:3743391:3749214:1 gene:Y39H10A.3 11/11 None
Y39H10A.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:3743391:3749084:1 gene:Y39H10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3743392-3749084(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y39H10A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84604 Mtm (myotubularin) family protein 9, isoform a [Caenorhabditis elegans] ref|NP_504038.1| MTM (myotubularin) family member (mtm-9) [Caenorhabditis elegans] gb|AAP79303.1| myotubularin-related protein MTM-9 [Caenorhabditis elegans] 0.0
blast CAE62558 Hypothetical protein CBG06668 [Caenorhabditis briggsae] 0.0
blast AAT68891 Mtm (myotubularin) family protein 9, isoform b [Caenorhabditis elegans] ref|NP_872167.2| MTM (myotubularin) family member (mtm-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 6.1E-62
Pfam IPR010569 EMBL-EBI Myotubularin-related 6.1E-62
Pfam IPR010569 EMBL-EBI Myotubularin-related 9.1E-62
Sequence
Target Sequence 
>C. ELEGANS:176520_AT
gatgcgaggacgatccgaggattcgaatcagtaatcgagcgagaatggatctgcggcgga
cacccgttcagtctccgtaacaaccattgcgcctacgcagagggtactgtaaccggcccc
tttgagtcgcccgtcttcctcgtcttcctcgacgccgtccatcaaatgatcgcccaatat
ccaatgtcattcgagttcgacgagaattttctcatctttttgttcgagcacgcctacgca
tcggaatttggaagctttttgggaaattgtgaaaaggagaagaaggataacggaatccga
aaaaagactgtctcactgtggtctcatgttcaccacccggaaaatatgaaacaatttgtg
aatgtttgttacgatccgacgcccggcgttatttggcccagtattgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGAGGACGATCCGAGGATTCG 144 415 1111 Antisense
GAGCGAGAATGGATCTGCGGCGGAC 142 387 1147 Antisense
TCAGTCTCCGTAACAACCATTGCGC 318 623 1178 Antisense
TTGCGCCTACGCAGAGGGTACTGTA 496 701 1197 Antisense
GATCGCCCAATATCCAATGTCATTC 695 415 1278 Antisense
TCATCTTTTTGTTCGAGCACGCCTA 701 619 1322 Antisense
CACGCCTACGCATCGGAATTTGGAA 372 199 1339 Antisense
ACTGTCTCACTGTGGTCTCATGTTC 572 97 1417 Antisense
CTCATGTTCACCACCCGGAAAATAT 141 229 1433 Antisense
GTGAATGTTTGTTACGATCCGACGC 625 481 1468 Antisense
GGCGTTATTTGGCCCAGTATTGCGC 122 541 1495 Antisense
Sequence Source Affymetrix Proprietary Database