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[176519_at]

Description Y71G12B.BB /REP_DB=WormBase Gene ID /WP=CE22916 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 72      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 20.2
(-1.5)
A 		3.9
(-3)
A 		47.8
(1.1)
A 		67.9
(3)
A 		64
B 33.4
(-3)
A 		48.8
(2.2)
A 		41.6
(-0.3)
A 		51.3
(3)
A 		18
C 30.8
(-0.8)
A 		17.7
(-1.9)
A 		3.4
(-3)
A 		78.8
(3)
A 		75
avr 28.1
(-2.4) 		23.5
(-3) 		30.9
(-2) 		66
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 14.9
(-2.2)
A 		13.8
(-2.4)
A 		49.8
(2.1)
A 		56.7
(3)
A 		10.2
(-2.8)
A 		8.6
(-3)
A 		48
B 27.8
(1.5)
A 		23.6
(0.7)
A 		25.7
(1.1)
A 		8.8
(-2.4)
A 		34.8
(3)
A 		5.9
(-3)
A 		29
C 3.8
(-3)
A 		22.1
(0.9)
A 		8
(-2.1)
A 		26.5
(1.9)
A 		31.6
(3)
A 		18.9
(0.3)
A 		28
avr 15.5
(-1.7) 		19.8
(-0.3) 		27.8
(2.1) 		30.7
(3) 		25.5
(1.4) 		11.1
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.3
(0.3)
A 		0.8
(-3)
A 		12.5
(3)
A 		9.9
(1.7)
A 		12
B 10.6
(-0.6)
A 		12.1
(3)
A 		9.6
(-3)
A 		10.9
(0.1)
A 		3
C 10.2
(1.5)
A 		5.1
(-1.1)
A 		1.2
(-3)
A 		13.3
(3)
A 		12
avr 9.4
(0.8) 		6
(-3) 		7.8
(-1) 		11.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.7
(-2.7)
A 		4.9
(-1.6)
A 		10.8
(1.2)
A 		14.4
(3)
A 		3.1
(-2.5)
A 		2.1
(-3)
A 		12
B 9.7
(0.8)
A 		7.8
(-0.2)
A 		6.2
(-1)
A 		2.3
(-2.9)
A 		14.1
(3)
A 		2.2
(-3)
A 		12
C 1.4
(-3)
A 		6.7
(0.6)
A 		2
(-2.6)
A 		5.3
(-0.3)
A 		10.2
(3)
A 		6.3
(0.3)
A 		9
avr 4.6
(-1.8) 		6.5
(0.2) 		6.3
(-0) 		7.3
(1.1) 		9.1
(3) 		3.5
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18720
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.BB NCBI
Target Description Y71G12B.BB /REP_DB=WormBase Gene ID /WP=CE22916 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058493(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058493 NCBI Caenorhabditis elegans Y71G12B.7 (Y71G12B.7) mRNA, complete cds. 9/11 None
Y71G12B.7 ENSEMBL cdna:known chromosome:CEL140:I:1792456:1792899:1 gene:Y71G12B.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1792407-1792899(+) 96.12 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.7
Entrez Gene 190599 Entrez gene
SwissProt Q95XM6 EMBL-EBI
WormBase CE36764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73933 Hypothetical protein Y71G12B.7 [Caenorhabditis elegans] ref|NP_490894.2| Y71G12B.7 [Caenorhabditis elegans] 1.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490894.2 1 100-122
Y71G12B.7 1 100-122
Sequence
Target Sequence 
>C. ELEGANS:176519_AT
acactctgccactgattttttttgcaccaggggcctatttagaatggggttttttttcaa
acgaattaggttttatttagaagtctggaacttaaactttttgaaagaattttggcgcgc
gaaacttgaatgctgtggtttttcatgctacgtggctgcaaaacttctattgtcgcagat
agagtatacaatcaatgtcctggatctatctcgatttcattcgcatgtctctctgcggct
ctcatctaccaatactctctcacttctatctgttcgttgcgatctctgcgctgccgtcct
tgaccgcgatatgtcatacagaaactgtattcattctcgactttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTCTGCCACTGATTTTTTTTGC 117 107 18 Antisense
GATTTTTTTTGCACCAGGGGCCTAT 367 427 31 Antisense
AAGAATTTTGGCGCGCGAAACTTGA 566 149 122 Antisense
TGCTGTGGTTTTTCATGCTACGTGG 456 579 148 Antisense
GCTACGTGGCTGCAAAACTTCTATT 154 301 164 Antisense
GAGTATACAATCAATGTCCTGGATC 375 399 199 Antisense
ATGTCCTGGATCTATCTCGATTTCA 467 49 212 Antisense
TCTCGATTTCATTCGCATGTCTCTC 596 611 226 Antisense
TCTATCTGTTCGTTGCGATCTCTGC 461 615 282 Antisense
CCGTCCTTGACCGCGATATGTCATA 540 263 311 Antisense
AACTGTATTCATTCTCGACTTTCTA 295 143 340 Antisense
Sequence Source Affymetrix Proprietary Database