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[176516_s_at]

Description Y39G10BM.D /REP_DB=WormBase Gene ID /WP=CE25270 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 35      4grp_high_8_8 > 18      6grp_total > 35      4grp_total > 29      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 184.3
(-0.9)
P 		192.7
(-0.3)
P 		153.1
(-3)
M 		241.2
(3)
P 		88
B 230.9
(3)
P 		144.7
(-0.2)
P 		67
(-3)
P 		127.9
(-0.8)
P 		164
C 217.2
(3)
P 		151.9
(-1.1)
P 		122.4
(-3)
P 		205.2
(2.2)
P 		95
avr 210.8
(3) 		163.1
(0) 		114.2
(-3) 		191.4
(1.8) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 123.3
(1.4)
P 		132.5
(2.1)
P 		88.5
(-1.3)
P 		139.2
(2.6)
P 		65.4
(-3)
P 		144.9
(3)
P 		80
B 93
(0.3)
P 		119.1
(3)
P 		104.6
(1.5)
P 		61.7
(-3)
P 		83
(-0.8)
P 		108.6
(1.9)
P 		57
C 141
(0.9)
P 		183.2
(3)
P 		172.8
(2.5)
P 		60.4
(-3)
A 		135.3
(0.7)
P 		94.8
(-1.3)
P 		123
avr 119.1
(0.3) 		144.9
(3) 		122
(0.6) 		87.1
(-3) 		94.6
(-2.2) 		116.1
(0) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 67.1
(3)
P 		41.8
(-1.8)
P 		40
(-2.1)
M 		35.3
(-3)
P 		32
B 73.6
(3)
P 		35.7
(-0.9)
P 		15.5
(-3)
P 		27.3
(-1.8)
P 		58
C 71.9
(3)
P 		43.7
(-1.5)
P 		42.7
(-1.7)
P 		34.6
(-3)
P 		37
avr 70.9
(3) 		40.4
(-1.8) 		32.7
(-3) 		32.4
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 22.7
(-2.3)
P 		47.1
(3)
P 		19.3
(-3)
P 		35.3
(0.5)
P 		19.7
(-2.9)
P 		35.3
(0.5)
P 		28
B 32.4
(1)
P 		39.7
(2.8)
P 		25.4
(-0.7)
P 		16.3
(-3)
P 		33.7
(1.3)
P 		40.5
(3)
P 		24
C 52.3
(2.5)
P 		55.9
(3)
P 		44
(1.4)
P 		12.1
(-3)
A 		43.8
(1.3)
P 		31.7
(-0.3)
P 		44
avr 35.8
(0.3) 		47.6
(3) 		29.6
(-1.1) 		21.2
(-3) 		32.4
(-0.5) 		35.8
(0.3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176516_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18763
Sequence Type Exemplar sequence
Representative Public ID Y39G10BM.D NCBI
Target Description Y39G10BM.D /REP_DB=WormBase Gene ID /WP=CE25270 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058537(11), NM_001026489(11), NM_001026490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058537 NCBI Caenorhabditis elegans W03F11.6a (W03F11.6) mRNA, complete cds. 11/11 A 
NM_001026489 NCBI Caenorhabditis elegans W03F11.6c (W03F11.6) mRNA, complete cds. 11/11 None
NM_001026490 NCBI Caenorhabditis elegans W03F11.6d (W03F11.6) mRNA, complete cds. 11/11 None
SNAP00000024815 ENSEMBL cdna:SNAP chromosome:CEL140:I:2168113:2175322:1 10/11 None
GENEFINDER00000024833 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2171321:2175063:1 11/11 None
W03F11.6a ENSEMBL cdna:known chromosome:CEL140:I:2160044:2209630:1 gene:W03F11.6 11/11 A 
W03F11.6c ENSEMBL cdna:known chromosome:CEL140:I:2160044:2205351:1 gene:W03F11.6 11/11 A 
W03F11.6e ENSEMBL cdna:known chromosome:CEL140:I:2160073:2200337:1 gene:W03F11.6 11/11 A 
W03F11.6d ENSEMBL cdna:known chromosome:CEL140:I:2160073:2203061:1 gene:W03F11.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171776 4 3 NM_001026488 175595_s_at (11), 177376_s_at (11)
NM_001026489 176513_s_at (11), 176516_s_at (11), 176647_s_at (11), 177376_s_at (11)
NM_001026490 176513_s_at (11), 176516_s_at (11), 176647_s_at (11)
NM_058537 175595_s_at (11), 176513_s_at (11), 176516_s_at (11), 176647_s_at (11), 177376_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2172031-2175063(+) 100.0 100.0
Public Domain and Genome References
Ensembl W03F11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18989 Hypothetical protein W03F11.6a [Caenorhabditis elegans] ref|NP_490938.3| W03F11.6a [Caenorhabditis elegans] 0.0
blast AAD20441 AF-6 [Caenorhabditis elegans] 0.0
blast AAO38588 Hypothetical protein W03F11.6c [Caenorhabditis elegans] ref|NP_001021660.1| W03F11.6c [Caenorhabditis elegans] 0.0
blast AAO38589 Hypothetical protein W03F11.6d [Caenorhabditis elegans] ref|NP_001021661.1| W03F11.6d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.5E-12
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.2E-18
Pfam IPR000159 EMBL-EBI RA domain 5.7E-19
Pfam IPR000159 EMBL-EBI RA domain 4.8E-20
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.6E-13
Sequence
Target Sequence 
>C. ELEGANS:176516_S_AT
atgtcagacctccgtgaaatcgacggacggcccattccaccaacagagtgcccgcttttc
gagatgactgctcgaagtggaaacggcgagaatggattcgattcgtttttggcgatcaag
cggaaaccgcatgattatcaagtcccctccacctcagttgttgctccatcatcagtcacc
ctaccaatgtctccattaacatcacttccaccacaaattcacaatcttccagtgcttatt
gtgatgaataatgatggtcacttgtcaacacaccgaataacgttacacgagggagtaaca
gaggttggaagtgacagtcaaatgtccaatttctcacagcataatatttatctcgatggt
ccggatattcgtggacgccacgcggcaatcgctttcatggaaggcgtcgtcacactaaca
ccatccactcgtgatgcctacctagaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCAGACCTCCGTGAAATCGACG 679 47 13 Antisense
GCCCGCTTTTCGAGATGACTGCTCG 257 287 62 Antisense
AACCGCATGATTATCAAGTCCCCTC 279 147 137 Antisense
ATGTCTCCATTAACATCACTTCCAC 55 49 199 Antisense
TCCACCACAAATTCACAATCTTCCA 558 589 219 Antisense
GATGGTCACTTGTCAACACACCGAA 39 409 265 Antisense
TGGTCCGGATATTCGTGGACGCCAC 94 553 369 Antisense
CCACGCGGCAATCGCTTTCATGGAA 13 275 390 Antisense
CATGGAAGGCGTCGTCACACTAACA 11 209 408 Antisense
ACACTAACACCATCCACTCGTGATG 479 109 424 Antisense
CCACTCGTGATGCCTACCTAGAGGT 573 273 437 Antisense
Sequence Source Affymetrix Proprietary Database