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[176515_at]

Description Y46E12BL.A /REP_DB=WormBase Gene ID /WP=CE26535 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 35      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 96.2
(0)
M 		76.6
(-3)
A 		85.7
(-1.6)
A 		115.7
(3)
A 		39
B 93.8
(3)
A 		90.7
(2.6)
A 		42.4
(-3)
A 		74
(0.7)
A 		51
C 128.8
(3)
P 		62.7
(-3)
A 		63.8
(-2.9)
A 		92.9
(-0.3)
A 		66
avr 106.3
(3) 		76.7
(-1.2) 		64
(-3) 		94.2
(1.3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 49.4
(-0.5)
A 		54.9
(-0)
A 		55
(0)
A 		90.5
(3)
A 		19.3
(-3)
A 		41.1
(-1.2)
A 		71
B 62.9
(1.7)
A 		72.1
(3)
A 		54.7
(0.5)
A 		31
(-3)
A 		39.9
(-1.7)
A 		60.7
(1.3)
A 		41
C 49.5
(1.5)
A 		63.3
(3)
A 		54.8
(2.1)
A 		8.9
(-3)
A 		35.4
(-0.1)
A 		44.5
(0.9)
A 		54
avr 53.9
(1.2) 		63.4
(3) 		54.8
(1.4) 		43.5
(-0.7) 		31.5
(-3) 		48.8
(0.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 35
(3)
M 		16.6
(-3)
A 		22.4
(-1.1)
A 		16.9
(-2.9)
A 		18
B 29.9
(3)
A 		22.4
(0.8)
A 		9.8
(-3)
A 		15.8
(-1.2)
A 		20
C 42.6
(3)
P 		18
(-2.5)
A 		22.2
(-1.6)
A 		15.7
(-3)
A 		27
avr 35.8
(3) 		19
(-2.1) 		18.1
(-2.4) 		16.1
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.1
(-1.8)
A 		19.5
(1.8)
A 		12
(-0.8)
A 		23
(3)
A 		5.8
(-3)
A 		10
(-1.5)
A 		17
B 21.9
(2.2)
A 		24
(3)
A 		13.3
(-1.1)
A 		8.2
(-3)
A 		16.2
(0)
A 		22.6
(2.5)
A 		16
C 18.4
(2.7)
A 		19.3
(3)
A 		14
(1.2)
A 		1.8
(-3)
A 		11.4
(0.3)
A 		14.9
(1.5)
A 		18
avr 16.5
(0.3) 		20.9
(3) 		13.1
(-1.7) 		11
(-3) 		11.1
(-2.9) 		15.8
(-0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18973
Sequence Type Exemplar sequence
Representative Public ID Y46E12BL.A NCBI
Target Description Y46E12BL.A /REP_DB=WormBase Gene ID /WP=CE26535 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000018034 ENSEMBL cdna:SNAP chromosome:CEL140:II:15219462:15226618:1 None
GENEFINDER00000018041 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15218459:15223340:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018033 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15218455-15220243(+) 73.99 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68491 Hypothetical protein Y46E12BL.4 [Caenorhabditis elegans] ref|NP_497321.1| Y46E12BL.4 [Caenorhabditis elegans] 1.0E-173
blast CAE73242 Hypothetical protein CBG20654 [Caenorhabditis briggsae] 1.0E-123
blast CAE73242 Hypothetical protein CBG20654 [Caenorhabditis briggsae] 1.0E-100
blast XP_780123 PREDICTED: similar to CG2944-PA, isoform A isoform 1 [Strongylocentrotus purpuratus] 1.0E-71
blast AAK68491 Hypothetical protein Y46E12BL.4 [Caenorhabditis elegans] ref|NP_497321.1| Y46E12BL.4 [Caenorhabditis elegans] 6.0E-69
blast AAH89259 Unknown (protein for MGC:85027) [Xenopus laevis] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-18
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:176515_AT
gagcattttctatttggcacaatcccgttctggcaatgggcacgagtttacgacgaatgt
ccatgcactactctggcagtattatttgaacgagtatgatacagatagtagtgataataa
caatgattcaaaaaatacatattccaatgtgtgtgtgtgtgtgtgtttttttctcgctcc
agagaaccaatatcgatggcatcacacactcactcacactgaatttgccggaaattttca
attccggcaatttgccaatttgccggaaatttcaaatccggcaatttgccgatttgccgg
aaattgttattttcggcaattcgccaatttgccggaaattttcaattccggcaaagtgcc
gattttcagaaaatttcaattccggcaatctgccaatttgccggaaattttcaattccgg
caatttgccaatttgccggaaatctagcgacacttgtccccatcatctgatgcttgctcg
acgagctcatcaacatatgcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATTTTCTATTTGGCACAATCC 342 389 309 Antisense
GCACAATCCCGTTCTGGCAATGGGC 323 317 325 Antisense
GGCAATGGGCACGAGTTTACGACGA 335 535 340 Antisense
TACGACGAATGTCCATGCACTACTC 300 647 357 Antisense
TCCATGCACTACTCTGGCAGTATTA 97 591 368 Antisense
GTGTTTTTTTCTCGCTCCAGAGAAC 584 483 471 Antisense
ATATCGATGGCATCACACACTCACT 275 21 498 Antisense
CACTCACTCACACTGAATTTGCCGG 662 197 515 Antisense
CGGAAATCTAGCGACACTTGTCCCC 243 243 745 Antisense
CATCATCTGATGCTTGCTCGACGAG 436 211 769 Antisense
CGACGAGCTCATCAACATATGCCCG 239 251 787 Antisense
Sequence Source Affymetrix Proprietary Database