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[176514_at]

Description Y71G12B.DD /REP_DB=WormBase Gene ID /WP=CE22918 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 09      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 1.7
(-3)
A 		1.8
(-3)
A 		14.4
(-1.3)
A 		47.7
(3)
A 		46
B 3.1
(-3)
A 		3.6
(-2.8)
A 		4.4
(-2.4)
A 		15.8
(3)
A 		13
C 2.8
(-2.6)
A 		4.6
(-2.1)
A 		1.7
(-3)
A 		20.5
(3)
A 		19
avr 2.5
(-3) 		3.3
(-2.8) 		6.8
(-2) 		28
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 21.3
(3)
A 		6.6
(-1.5)
A 		5.7
(-1.8)
A 		2.8
(-2.7)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		19
B 4.7
(-0.1)
A 		8.5
(3)
A 		1.4
(-2.8)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		2.5
(-1.9)
A 		7
C 4.7
(-2.1)
A 		0.9
(-3)
A 		2.1
(-2.7)
A 		25.6
(3)
A 		2
(-2.7)
A 		0.8
(-3)
A 		25
avr 10.2
(3) 		5.3
(-0.5) 		3.1
(-2) 		9.8
(2.7) 		1.7
(-3) 		1.8
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-2.8)
A 		0.4
(-3)
A 		3.8
(0.1)
A 		7
(3)
A 		7
B 1
(-2.8)
A 		0.9
(-3)
A 		1
(-2.8)
A 		3.4
(3)
A 		3
C 0.9
(-2.4)
A 		1.3
(-1.6)
A 		0.6
(-3)
A 		3.5
(3)
A 		3
avr 0.8
(-3) 		0.9
(-2.8) 		1.8
(-1.4) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.9
(3)
A 		2.4
(0.4)
A 		1.2
(-1.8)
A 		0.7
(-2.6)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		3
B 1.6
(0.1)
A 		2.8
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.5
(-2.5)
A 		0.9
(-1.6)
A 		3
C 1.7
(-1.3)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		5.1
(3)
A 		0.7
(-2.5)
A 		0.3
(-3)
A 		5
avr 2.4
(3) 		1.8
(1) 		0.7
(-2.7) 		2
(1.7) 		0.6
(-3) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18699
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.DD NCBI
Target Description Y71G12B.DD /REP_DB=WormBase Gene ID /WP=CE22918 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058496
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001796 ENSEMBL cdna:SNAP chromosome:CEL140:I:1799718:1808035:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007559 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1799717-1808013(+) 88.99 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73931 Hypothetical protein Y71G12B.5 [Caenorhabditis elegans] ref|NP_490897.2| Y71G12B.5 [Caenorhabditis elegans] 0.0
blast CAE74442 Hypothetical protein CBG22177 [Caenorhabditis briggsae] 3.0E-79
blast CAE74409 Hypothetical protein CBG22141 [Caenorhabditis briggsae] 3.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001796 1 1224-1246
Sequence
Target Sequence 
>C. ELEGANS:176514_AT
caatttatatttccggcaattgccggttttacgaaatttcggcaattgtctgttttggga
attatcggcaattgctggttttgggaattatcggcacttgccggttttcaaaatttccgg
caattgtcagttttggaaatttcggcaattgtctgttttgggaattatcggcaattgctg
gttttgggaattatcggcacttgccggttttcaaaatttccggcaattgccggttttggg
aatttttggcaattgccggttttggaaattttcggctattgccgattttgggaaatttcg
gcaattgccggttttgggaatttttggctattgccggttttgggaattttcggctattgc
cggttttgggaatttttgaaattgccggttttcaaaatgtccggcaatccacaatttcgg
caatttagatgttctgttattttcttttgttttaacttcgaagttgtcacttccagctac
gtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTATATTTCCGGCAATTGCCG 199 181 3169 Antisense
AATTTCCGGCAATTGTCAGTTTTGG 693 173 3280 Antisense
CCGGCAATTGTCAGTTTTGGAAATT 521 255 3285 Antisense
TTTGGCAATTGCCGGTTTTGGAAAT 378 665 3413 Antisense
TTGGCTATTGCCGGTTTTGGGAATT 351 651 3492 Antisense
GTTTTCAAAATGTCCGGCAATCCAC 684 447 3556 Antisense
AATGTCCGGCAATCCACAATTTCGG 560 161 3564 Antisense
ATTTCGGCAATTTAGATGTTCTGTT 667 15 3582 Antisense
TTAGATGTTCTGTTATTTTCTTTTG 569 681 3593 Antisense
AACTTCGAAGTTGTCACTTCCAGCT 10 139 3622 Antisense
CGAAGTTGTCACTTCCAGCTACGTG 515 253 3627 Antisense
Sequence Source Affymetrix Proprietary Database