[Home] | [Total List]

[176513_s_at]

Description Y39G10BM.G /REP_DB=WormBase Gene ID /WP=CE21749 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 26      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 243.7
(3)
P 		166
(-1.2)
P 		146.5
(-2.3)
P 		133.6
(-3)
P 		110
B 179.8
(3)
P 		157.5
(1)
P 		111.9
(-3)
P 		175.8
(2.6)
P 		68
C 176.6
(-1.4)
P 		168.7
(-1.7)
P 		138.8
(-3)
P 		279.3
(3)
P 		141
avr 200
(3) 		164.1
(-0.2) 		132.4
(-3) 		196.2
(2.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 140
(-0.1)
P 		212.4
(3)
P 		132.9
(-0.4)
P 		133.9
(-0.4)
P 		74.1
(-3)
P 		147.9
(0.2)
P 		138
B 218.1
(3)
P 		159.5
(0.1)
P 		105.3
(-2.6)
P 		149.6
(-0.4)
P 		96.3
(-3)
P 		139
(-0.9)
P 		122
C 204.3
(3)
P 		150.4
(-0.1)
P 		167.5
(0.9)
P 		99.7
(-3)
P 		132
(-1.1)
P 		137.9
(-0.8)
P 		105
avr 187.5
(3) 		174.1
(2.1) 		135.2
(-0.6) 		127.7
(-1.1) 		100.8
(-3) 		141.6
(-0.2) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 88.7
(3)
P 		36
(-1.6)
P 		38.3
(-1.4)
P 		19.6
(-3)
P 		69
B 57.3
(3)
P 		38.9
(-0.5)
P 		25.9
(-3)
P 		37.5
(-0.8)
P 		31
C 58.5
(3)
P 		48.5
(-2.3)
P 		48.4
(-2.3)
P 		47.1
(-3)
P 		11
avr 68.2
(3) 		41.1
(-1.9) 		37.5
(-2.5) 		34.7
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 25.8
(-2.6)
P 		75.5
(3)
P 		28.9
(-2.3)
P 		34
(-1.7)
P 		22.3
(-3)
P 		36
(-1.5)
P 		53
B 75.9
(3)
P 		53.1
(0.3)
P 		25.6
(-3)
P 		39.6
(-1.3)
P 		39.1
(-1.4)
P 		51.8
(0.1)
P 		50
C 75.7
(3)
P 		45.9
(-0.2)
P 		42.6
(-0.6)
P 		20
(-3)
P 		42.7
(-0.6)
P 		46.2
(-0.2)
P 		56
avr 59.1
(3) 		58.2
(2.8) 		32.4
(-2.7) 		31.2
(-3) 		34.7
(-2.2) 		44.7
(-0.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176513_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18714
Sequence Type Exemplar sequence
Representative Public ID Y39G10BM.G NCBI
Target Description Y39G10BM.G /REP_DB=WormBase Gene ID /WP=CE21749 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058537(11), NM_001026489(11), NM_001026490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058537 NCBI Caenorhabditis elegans W03F11.6a (W03F11.6) mRNA, complete cds. 11/11 A 
NM_001026489 NCBI Caenorhabditis elegans W03F11.6c (W03F11.6) mRNA, complete cds. 11/11 None
NM_001026490 NCBI Caenorhabditis elegans W03F11.6d (W03F11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000024826 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2185758:2209334:1 11/11 None
W03F11.6a ENSEMBL cdna:known chromosome:CEL140:I:2160044:2209630:1 gene:W03F11.6 11/11 A 
W03F11.6c ENSEMBL cdna:known chromosome:CEL140:I:2160044:2205351:1 gene:W03F11.6 11/11 A 
W03F11.6e ENSEMBL cdna:known chromosome:CEL140:I:2160073:2200337:1 gene:W03F11.6 11/11 A 
W03F11.6d ENSEMBL cdna:known chromosome:CEL140:I:2160073:2203061:1 gene:W03F11.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024819 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171776 4 3 NM_001026488 175595_s_at (11), 177376_s_at (11)
NM_001026489 176513_s_at (11), 176516_s_at (11), 176647_s_at (11), 177376_s_at (11)
NM_001026490 176513_s_at (11), 176516_s_at (11), 176647_s_at (11)
NM_058537 175595_s_at (11), 176513_s_at (11), 176516_s_at (11), 176647_s_at (11), 177376_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2195533-2197291(+) 100.0 100.0
Public Domain and Genome References
Ensembl W03F11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18989 Hypothetical protein W03F11.6a [Caenorhabditis elegans] ref|NP_490938.3| W03F11.6a [Caenorhabditis elegans] 0.0
blast AAD20441 AF-6 [Caenorhabditis elegans] 0.0
blast AAO38588 Hypothetical protein W03F11.6c [Caenorhabditis elegans] ref|NP_001021660.1| W03F11.6c [Caenorhabditis elegans] 0.0
blast AAO38589 Hypothetical protein W03F11.6d [Caenorhabditis elegans] ref|NP_001021661.1| W03F11.6d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.5E-12
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.2E-18
Pfam IPR000159 EMBL-EBI RA domain 5.7E-19
Pfam IPR000159 EMBL-EBI RA domain 4.8E-20
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.6E-13
Sequence
Target Sequence 
>C. ELEGANS:176513_S_AT
gcgatgctcattatcatcagcatcagcatcagcagcagcagaacccgattgtgagaagtg
tgtcgcagactacactgaccagtattccgactacacaatttggcgacagttttggaagtg
ccgtgtcggatacgatatcgaaggtgacactgcggaagaatggagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATGCTCATTATCATCAGCATCA 219 291 1046 Antisense
AGCAGCAGCAGAACCCGATTGTGAG 160 77 1076 Antisense
AGAACCCGATTGTGAGAAGTGTGTC 517 73 1085 Antisense
GTGTGTCGCAGACTACACTGACCAG 1 489 1103 Antisense
TACACTGACCAGTATTCCGACTACA 428 643 1116 Antisense
GTATTCCGACTACACAATTTGGCGA 662 451 1127 Antisense
CCGACTACACAATTTGGCGACAGTT 581 263 1132 Antisense
GGCGACAGTTTTGGAAGTGCCGTGT 614 539 1147 Antisense
AAGTGCCGTGTCGGATACGATATCG 674 157 1161 Antisense
TACGATATCGAAGGTGACACTGCGG 364 645 1176 Antisense
GGTGACACTGCGGAAGAATGGAGGA 552 499 1188 Antisense
Sequence Source Affymetrix Proprietary Database