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[176511_at]

Description Y92H12BL.A /REP_DB=WormBase Gene ID /WP=CE26606 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 09      6grp_total > 64      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 96.5
(3)
P 		59
(-3)
A 		61.7
(-2.6)
P 		69.3
(-1.4)
A 		38
B 90.4
(2.7)
P 		74.6
(-3)
A 		75.9
(-2.5)
A 		91.2
(3)
P 		17
C 120.5
(3)
P 		64.6
(-3)
P 		66.5
(-2.8)
P 		89.5
(-0.3)
P 		56
avr 102.5
(3) 		66.1
(-3) 		68
(-2.7) 		83.3
(-0.2) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 51.9
(1.1)
A 		30.8
(-3)
A 		51.4
(1)
P 		57.4
(2.2)
P 		35.6
(-2.1)
A 		61.4
(3)
P 		31
B 44.7
(-0.7)
A 		50.1
(-0)
P 		51
(0.1)
P 		65.1
(2)
P 		27.8
(-3)
P 		72.6
(3)
P 		45
C 15.1
(-2.3)
A 		73.3
(1.6)
P 		80.8
(2.1)
P 		95.1
(3)
A 		3.8
(-3)
A 		52.2
(0.2)
P 		91
avr 37.2
(-1.2) 		51.4
(0.5) 		61.1
(1.6) 		72.5
(3) 		22.4
(-3) 		62.1
(1.8) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 35.1
(3)
P 		12.8
(-2.4)
A 		16.1
(-1.6)
P 		10.2
(-3)
A 		25
B 28.8
(3)
P 		18.4
(-2.6)
A 		17.6
(-3)
A 		19.4
(-2)
P 		11
C 39.9
(3)
P 		18.6
(-2.2)
P 		23.2
(-1)
P 		15.1
(-3)
P 		25
avr 34.6
(3) 		16.6
(-2.5) 		19
(-1.8) 		14.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.6
(-3)
A 		11
(-1.4)
A 		11.2
(-1.2)
P 		14.6
(2.7)
P 		10.7
(-1.8)
A 		14.9
(3)
P 		5
B 15.6
(-1.4)
A 		16.7
(-0.9)
P 		12.4
(-2.6)
P 		17.2
(-0.8)
P 		11.3
(-3)
P 		27.1
(3)
P 		16
C 5.6
(-1.8)
A 		22.4
(3)
P 		20.6
(2.5)
P 		19.1
(2.1)
A 		1.2
(-3)
A 		17.5
(1.6)
P 		21
avr 10.3
(-1.7) 		16.7
(1.5) 		14.7
(0.5) 		17
(1.6) 		7.7
(-3) 		19.8
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18626
Sequence Type Exemplar sequence
Representative Public ID Y92H12BL.A NCBI
Target Description Y92H12BL.A /REP_DB=WormBase Gene ID /WP=CE26606 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058445(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058445 NCBI Caenorhabditis elegans Y92H12BL.4 (Y92H12BL.4) mRNA, complete cds. 10/11 None
Y92H12BL.4 ENSEMBL cdna:known chromosome:CEL140:I:1379153:1385058:-1 gene:Y92H12BL.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1379152-1385058(-) 79.25 100.0
Public Domain and Genome References
Gene Title
Ensembl Y92H12BL.4
Entrez Gene 190787 Entrez gene
SwissProt Q9BKW0 EMBL-EBI
WormBase CE36769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK19005 Hypothetical protein Y92H12BL.4 [Caenorhabditis elegans] ref|NP_490846.3| Y92H12BL.4 [Caenorhabditis elegans] 1.0E-119
blast CAE69082 Hypothetical protein CBG15100 [Caenorhabditis briggsae] 2.0E-49
blast CAE69083 Hypothetical protein CBG15101 [Caenorhabditis briggsae] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005839 EMBL-EBI Protein of unknown function UPF0004 2.7E-11
Sequence
Target Sequence 
>C. ELEGANS:176511_AT
atacgacgaggctgggaacttctagcaatagtgcttgcattcattttcccaacagaagcg
atcaacgagaagcttaacgagttcctaaacaagcatttggatccaatattcgatcttcca
gaagtctcaacttcatatttctcccaacaatgtataaaacggctgagcaaagtgattgct
cgactcaaaccgagtctttccacaattcaagagactaaaattcatatattccggccgccg
ctcttctcggcttcactcgaagagctcatgcaaatgcaatctgaaaaattccccgagttg
aagcttccgtggcttttgactactcttattgagctcctttatcaatctgggggccggagg
actgaagggctgtttcgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGACGAGGCTGGGAACTTCTAG 215 1 556 Antisense
ATAGTGCTTGCATTCATTTTCCCAA 547 21 583 Antisense
GAAGTCTCAACTTCATATTTCTCCC 59 337 676 Antisense
GCAAAGTGATTGCTCGACTCAAACC 177 317 722 Antisense
AAACCGAGTCTTTCCACAATTCAAG 303 125 742 Antisense
CTTCTCGGCTTCACTCGAAGAGCTC 273 221 798 Antisense
CCCGAGTTGAAGCTTCCGTGGCTTT 594 227 847 Antisense
CGTGGCTTTTGACTACTCTTATTGA 506 243 863 Antisense
TGAGCTCCTTTATCAATCTGGGGGC 527 563 885 Antisense
CAATCTGGGGGCCGGAGGACTGAAG 210 179 898 Antisense
GAGGACTGAAGGGCTGTTTCGCCGA 140 403 912 Antisense
Sequence Source Affymetrix Proprietary Database