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[176510_at]

Description Y39G10BM.B /REP_DB=WormBase Gene ID /WP=CE21746 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 66      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-3)
A 		2.9
(-2)
A 		5
(3)
A 		2.8
(-2.3)
A 		3
B 11.1
(3)
A 		2.4
(-3)
A 		3.2
(-2.4)
A 		4
(-1.9)
A 		9
C 6.6
(3)
A 		3.4
(-3)
A 		5.4
(0.8)
A 		5.1
(0.2)
A 		3
avr 6.7
(3) 		2.9
(-3) 		4.5
(-0.5) 		4
(-1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.2
(-2.2)
A 		1.8
(-3)
A 		2
(-2.6)
A 		2.2
(-2.2)
A 		2.4
(-1.8)
A 		4.9
(3)
A 		3
B 1.1
(-3)
A 		1.8
(0.5)
A 		2.3
(3)
A 		1.8
(0.5)
A 		1.4
(-1.5)
A 		2.3
(3)
A 		1
C 1.6
(-3)
A 		2.1
(-0.9)
A 		2.7
(1.7)
A 		2.2
(-0.4)
A 		1.9
(-1.7)
A 		3
(3)
A 		1
avr 1.6
(-3) 		1.9
(-2) 		2.3
(-0.7) 		2.1
(-1.3) 		1.9
(-2) 		3.4
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(0.3)
A 		0.6
(-1.7)
A 		1.3
(3)
A 		0.4
(-3)
A 		1
B 3.6
(3)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		0.8
(-2.6)
A 		3
C 2.2
(3)
A 		1
(-2.5)
A 		1.9
(1.6)
A 		0.9
(-3)
A 		1
avr 2.2
(3) 		0.7
(-3) 		1.3
(-0.6) 		0.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-1.5)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		0.7
(-0.8)
A 		1.2
(3)
A 		1
B 0.4
(-3)
A 		0.6
(-0.6)
A 		0.6
(-0.6)
A 		0.5
(-1.8)
A 		0.6
(-0.6)
A 		0.9
(3)
A 		1
C 0.6
(-1)
A 		0.6
(-1)
A 		0.7
(-0)
A 		0.4
(-3)
A 		0.6
(-1)
A 		1
(3)
A 		1
avr 0.5
(-3) 		0.6
(-1.8) 		0.6
(-1.8) 		0.5
(-3) 		0.6
(-1.8) 		1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18724
Sequence Type Exemplar sequence
Representative Public ID Y39G10BM.B NCBI
Target Description Y39G10BM.B /REP_DB=WormBase Gene ID /WP=CE21746 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39G10BM.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39G10BM.B Y39G10BM.B /REP_DB=WormBase Gene ID /WP=CE21746 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058537 11/11 Negative Strand Matching Probes A 
NM_001026489 11/11 Negative Strand Matching Probes None
NM_001026490 11/11 Negative Strand Matching Probes None
GENEFINDER00000024826 11/11 Negative Strand Matching Probes None
SNAP00000024819 11/11 Negative Strand Matching Probes None
W03F11.6a 11/11 Negative Strand Matching Probes A 
W03F11.6c 11/11 Negative Strand Matching Probes A 
W03F11.6e 11/11 Negative Strand Matching Probes A 
W03F11.6d 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2196013-2196577(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176510_AT
atcgcttgctccaatatgcatcgcatgcatcgaatgggtcatcgcagccggcggtgccgg
tgtaagcgacaccgtatgacagaggcgcctatgctgaagttgctgcaagtactgccaaag
accatctggcaccgttcggaactgctcgacaaagtaaccatcctgagggatcaggaacgg
aaggttcagctcgtcggactcctccagtgtcacgcgctgcccatcctccaacgtcagctt
atccgcctgtttttcagcgagtctacagatccgatcaacgacgtcatcgtcacatggaat
ctcgccgtcgtctggttcgaatcccgacaggatatgaaccacttggaggctgttcagctt
atagcacgtcgatcccaacgcggcaacatcattcttctgcgtggcgagaaggttagcggc
ctgacgggatctatccaaatggcactcggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCTTGCTCCAATATGCATCGCA 577 37 19 Antisense
TGCATCGAATGGGTCATCGCAGCCG 86 579 44 Antisense
CGCAGCCGGCGGTGCCGGTGTAAGC 692 251 61 Antisense
GCGACACCGTATGACAGAGGCGCCT 480 287 84 Antisense
AGAGGCGCCTATGCTGAAGTTGCTG 135 69 99 Antisense
GAACGGAAGGTTCAGCTCGTCGGAC 527 305 193 Antisense
TTCAGCGAGTCTACAGATCCGATCA 271 685 271 Antisense
CGTCGTCTGGTTCGAATCCCGACAG 606 243 324 Antisense
GAGGCTGTTCAGCTTATAGCACGTC 662 405 364 Antisense
AGAAGGTTAGCGGCCTGACGGGATC 660 71 425 Antisense
GATCTATCCAAATGGCACTCGGCGG 625 417 446 Antisense
Sequence Source Affymetrix Proprietary Database