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[176509_at]

Description Y92H12BL.C /REP_DB=WormBase Gene ID /WP=CE26608 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 82      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 33.5
(-1.5)
A 		117.4
(3)
A 		37.2
(-1.3)
A 		6.3
(-3)
A 		111
B 43.9
(-3)
A 		68
(0.6)
A 		84.6
(3)
A 		54.2
(-1.5)
A 		41
C 23.7
(-3)
A 		55.8
(3)
A 		47.2
(1.4)
A 		46
(1.2)
A 		32
avr 33.7
(-3) 		80.4
(3) 		56.3
(-0.1) 		35.5
(-2.8) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 49.5
(0.3)
A 		8.6
(-3)
A 		81.9
(3)
A 		45.2
(-0)
A 		65.8
(1.7)
A 		18.3
(-2.2)
A 		73
B 7.3
(-3)
A 		42
(0)
A 		14.1
(-2.4)
A 		59.2
(1.5)
A 		76.2
(3)
A 		9.9
(-2.8)
A 		69
C 7
(-3)
A 		36.9
(1.3)
A 		48.7
(2.9)
A 		26.6
(-0.2)
A 		14.2
(-2)
A 		49.2
(3)
A 		42
avr 21.3
(-3) 		29.2
(-1.5) 		48.2
(2.2) 		43.7
(1.4) 		52.1
(3) 		25.8
(-2.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 12.2
(-0.2)
A 		25.5
(3)
A 		9.7
(-0.9)
A 		0.9
(-3)
A 		25
B 14
(-1.1)
A 		16.8
(0.9)
A 		19.6
(3)
A 		11.5
(-3)
A 		8
C 7.9
(-2.9)
A 		16.1
(2.7)
A 		16.5
(3)
A 		7.8
(-3)
A 		9
avr 11.4
(-0.8) 		19.5
(3) 		15.3
(1) 		6.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 9.1
(-0.9)
A 		3.1
(-3)
A 		17.8
(2.3)
A 		11.5
(0)
A 		19.9
(3)
A 		4.5
(-2.5)
A 		17
B 2.5
(-3)
A 		14
(-0.6)
A 		3.4
(-2.8)
A 		15.7
(-0.2)
A 		31
(3)
A 		3.7
(-2.7)
A 		29
C 2.6
(-3)
A 		11.3
(0.8)
A 		12.4
(1.2)
A 		5.3
(-1.8)
A 		4.6
(-2.1)
A 		16.5
(3)
A 		14
avr 4.7
(-3) 		9.5
(-0.9) 		11.2
(-0.2) 		10.8
(-0.3) 		18.5
(3) 		8.2
(-1.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18641
Sequence Type Exemplar sequence
Representative Public ID Y92H12BL.C NCBI
Target Description Y92H12BL.C /REP_DB=WormBase Gene ID /WP=CE26608 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y92H12BL.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y92H12BL.C Y92H12BL.C /REP_DB=WormBase Gene ID /WP=CE26608 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058442 11/11 Negative Strand Matching Probes A 
GENEFINDER00000027024 11/11 Negative Strand Matching Probes None
K12C11.1.1 11/11 Negative Strand Matching Probes None
K12C11.1.2 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1342298-1344588(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176509_AT
tggccgcatgtgcttcatcgcggctcggtgagcttccgacgcgattttactagcatatct
catcacaccaatctccttctccgtcttgacaactctcagctcggccatttccttgtagag
aagctccgtgtcaagctggaaatctccacttccagcgaatttcggctcggcgagcacatc
tccggaatcagtgttctcggctctcagcaaataaacgtgttttgcagacaattccttcaa
tttctcagcgatcgtcgtggttttatcgttgaataccacctcatcaaccgcatatttctc
cttgaaaaactgctcattattgatttttccatcccaaatcgcgtagctcgggtcgaggcg
gggagcgaaaagtgtcgtttttccgccggacctcacgtcaattgctccgtagaattcgct
ctcgttgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCGCATGTGCTTCATCGCGGCT 241 545 559 Antisense
TGAGCTTCCGACGCGATTTTACTAG 54 569 587 Antisense
TTTACTAGCATATCTCATCACACCA 154 673 604 Antisense
CACTTCCAGCGAATTTCGGCTCGGC 307 197 705 Antisense
GCACATCTCCGGAATCAGTGTTCTC 274 317 732 Antisense
AGTGTTCTCGGCTCTCAGCAAATAA 605 59 748 Antisense
ATTCCTTCAATTTCTCAGCGATCGT 691 7 789 Antisense
TCATCAACCGCATATTTCTCCTTGA 283 619 839 Antisense
TCCATCCCAAATCGCGTAGCTCGGG 298 589 886 Antisense
ACCTCACGTCAATTGCTCCGTAGAA 457 87 948 Antisense
TCCGTAGAATTCGCTCTCGTTGACA 253 593 964 Antisense
Sequence Source Affymetrix Proprietary Database