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[176508_at]

Description Y108G3AL.B /REP_DB=WormBase Gene ID /WP=CE26036 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 74      4grp_total > 32      6grp_cgc > 76      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.3
(3)
A 		2.9
(-3)
A 		5.4
(-1.7)
A 		3.5
(-2.7)
A 		11
B 2.9
(-3)
A 		6.5
(-1.8)
A 		21.5
(3)
A 		16.2
(1.3)
A 		19
C 4.9
(3)
A 		4.1
(0.9)
A 		4.3
(1.4)
A 		2.6
(-3)
A 		2
avr 7.4
(-0.1) 		4.5
(-3) 		10.4
(3) 		7.4
(-0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 23.7
(3)
A 		2.5
(-3)
A 		8.1
(-1.4)
A 		15.9
(0.8)
A 		11.7
(-0.4)
A 		16.6
(1)
A 		21
B 11.5
(-0.7)
A 		5
(-2.4)
A 		26.2
(3)
A 		2.6
(-3)
A 		22.2
(2)
A 		24.2
(2.5)
A 		24
C 5.7
(-3)
A 		11.9
(-1.9)
A 		14.8
(-1.4)
A 		39.5
(3)
A 		12.9
(-1.7)
A 		11.3
(-2)
A 		34
avr 13.6
(0.3) 		6.5
(-3) 		16.4
(1.6) 		19.3
(3) 		15.6
(1.3) 		17.4
(2.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.2
(3)
A 		0.6
(-2.9)
A 		1.4
(-1.9)
A 		0.5
(-3)
A 		5
B 0.9
(-3)
A 		1.6
(-2)
A 		5
(3)
A 		3.4
(0.7)
A 		4
C 1.6
(3)
A 		1.2
(1)
A 		1.5
(2.5)
A 		0.4
(-3)
A 		1
avr 2.6
(3) 		1.1
(-3) 		2.6
(3) 		1.4
(-1.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.4
(3)
A 		0.9
(-3)
A 		1.8
(-1.5)
A 		4
(2.3)
A 		3.5
(1.5)
A 		4
(2.3)
A 		4
B 4
(-0.6)
A 		1.6
(-2.3)
A 		6.4
(1.1)
A 		0.7
(-3)
A 		9
(3)
A 		9
(3)
A 		8
C 2.1
(-3)
A 		3.6
(-1.5)
A 		3.8
(-1.3)
A 		8
(3)
A 		4.2
(-0.9)
A 		3.8
(-1.3)
A 		6
avr 3.5
(-0.5) 		2
(-3) 		4
(0.3) 		4.2
(0.7) 		5.6
(3) 		5.6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19488
Sequence Type Exemplar sequence
Representative Public ID Y108G3AL.B NCBI
Target Description Y108G3AL.B /REP_DB=WormBase Gene ID /WP=CE26036 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y108G3AL.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y108G3AL.B Y108G3AL.B /REP_DB=WormBase Gene ID /WP=CE26036 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070750 11/11 Negative Strand Matching Probes A 
SNAP00000023640 11/11 Negative Strand Matching Probes None
GENEFINDER00000023664 11/11 Negative Strand Matching Probes None
Y108G3AL.1.2 11/11 Negative Strand Matching Probes None
Y108G3AL.1.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:178581-180789(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176508_AT
gtctctgaagcttgtggccagtgtcagccaaagctccttgtctctgaacatattctcaag
cttctgagtaaactggcaaccacactctgtcttcagctttgccagcagagccttctccac
atcgtcggagcacgatttgtcgagcaagagacgtttggcgagatagcggaacaagatcat
cacattgtcgagcttattgtccatttcggcgtccgacacacatttcagaccgcttcgcag
catatcgtccatgtagagggccacaaattccggcgattggcgattcgagttgaggaacgt
ctcgaaatcatgctggaagcgattcttaaagtcacgatcgtcggcaaacgcagtggtgag
cagactggagaagtagtctttgagctggagcaattcgttgacaaaattgacggggttttt
gagcagatcctcatttttcacaatgttcgagccggtttcgttgagatatctggaaaaaaa
aaagagcatcgcgaattcggtcgccaatcccgttttgccgcagaatttccgtccgatacg
cgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTGAAGCTTGTGGCCAGTGTC 13 469 271 Antisense
TCAGCCAAAGCTCCTTGTCTCTGAA 638 625 294 Antisense
AGTAAACTGGCAACCACACTCTGTC 117 63 337 Antisense
TCTGTCTTCAGCTTTGCCAGCAGAG 344 607 356 Antisense
CGAGCTTATTGTCCATTTCGGCGTC 4 251 459 Antisense
CTTCGCAGCATATCGTCCATGTAGA 60 221 503 Antisense
AGAGGGCCACAAATTCCGGCGATTG 264 65 525 Antisense
GTCACGATCGTCGGCAAACGCAGTG 256 465 601 Antisense
GAGCATCGCGAATTCGGTCGCCAAT 422 389 754 Antisense
CAATCCCGTTTTGCCGCAGAATTTC 584 179 775 Antisense
CGCAGAATTTCCGTCCGATACGCGT 514 253 789 Antisense
Sequence Source Affymetrix Proprietary Database