[Home] | [Total List]

[176507_at]

Description Y43H11AL.E /REP_DB=WormBase Gene ID /WP=CE21922 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 28      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 58.3
(1.1)
A 		6.8
(-3)
A 		51.2
(0.6)
A 		81.5
(3)
A 		75
B 72.6
(-3)
A 		110
(3)
A 		75.1
(-2.6)
A 		100
(1.4)
A 		37
C 92.2
(-0.1)
A 		131.6
(3)
A 		55.6
(-3)
A 		86.8
(-0.5)
A 		76
avr 74.4
(-0.1) 		82.8
(1.6) 		60.6
(-3) 		89.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 141.5
(3)
P 		38.9
(-3)
A 		40.5
(-2.9)
A 		62.1
(-1.6)
A 		58
(-1.9)
A 		69.2
(-1.2)
A 		103
B 72.3
(3)
A 		50
(-0.4)
A 		48.4
(-0.6)
A 		32.7
(-3)
A 		58.1
(0.8)
A 		40.2
(-1.9)
A 		40
C 97.2
(3)
A 		47.5
(-1.4)
A 		74.7
(1)
A 		84
(1.8)
A 		84.8
(1.9)
A 		30
(-3)
A 		67
avr 103.7
(3) 		45.5
(-3) 		54.5
(-2.1) 		59.6
(-1.5) 		67
(-0.8) 		46.5
(-2.9) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 21.2
(3)
A 		1.5
(-3)
A 		13.4
(0.6)
A 		11.9
(0.2)
A 		20
B 23.1
(0.5)
A 		27.2
(3)
A 		17.4
(-3)
A 		21.3
(-0.6)
A 		10
C 30.5
(1.1)
A 		37.8
(3)
A 		19.4
(-1.8)
A 		14.6
(-3)
A 		23
avr 24.9
(3) 		22.2
(1.2) 		16.7
(-2.5) 		15.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 26.1
(3)
P 		13.8
(-1.3)
A 		8.8
(-3)
A 		15.7
(-0.6)
A 		17.5
(0)
A 		16.8
(-0.2)
A 		17
B 25.1
(3)
A 		16.7
(-0.1)
A 		11.7
(-1.9)
A 		8.7
(-3)
A 		23.6
(2.5)
A 		15
(-0.7)
A 		16
C 36
(3)
A 		14.5
(-2)
A 		19
(-0.9)
A 		16.9
(-1.4)
A 		27.4
(1)
A 		10
(-3)
A 		26
avr 29.1
(3) 		15
(-2.3) 		13.2
(-3) 		13.8
(-2.8) 		22.8
(0.6) 		13.9
(-2.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18882
Sequence Type Exemplar sequence
Representative Public ID Y43H11AL.E NCBI
Target Description Y43H11AL.E /REP_DB=WormBase Gene ID /WP=CE21922 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y43H11AL.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y43H11AL.E Y43H11AL.E /REP_DB=WormBase Gene ID /WP=CE21922 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061286 10/11 Negative Strand Matching Probes A 
SNAP00000010698 10/11 Negative Strand Matching Probes None
Y43H11AL.3 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:251580-251910(+) 91.82 100.0
Sequence
Target Sequence 
>C. ELEGANS:176507_AT
ttcttgttcttcggcattttcagctcagtgtccaaactgtcgccctgttccagaacaccg
tcaacagtctgacagaatcgagtgaacgtctcgttgtcggccagcgcttgcaggctccac
gcgttttggctctcctcgtcggcttttcgcgatttttctcgttccattttcagacgcagg
cgctcttgccattcagcatcccgcgattcgataacgtcttctggagttggagatctatct
ttcctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGTTCTTCGGCATTTTCAGCT 512 687 38 Antisense
TTCTTCGGCATTTTCAGCTCAGTGT 645 689 44 Antisense
TCAGCTCAGTGTCCAAACTGTCGCC 193 625 57 Antisense
CCCTGTTCCAGAACACCGTCAACAG 575 257 80 Antisense
GAACACCGTCAACAGTCTGACAGAA 23 353 90 Antisense
CGAGTGAACGTCTCGTTGTCGGCCA 624 247 116 Antisense
GATTTTTCTCGTTCCATTTTCAGAC 294 429 188 Antisense
CATTTTCAGACGCAGGCGCTCTTGC 150 215 202 Antisense
TTCAGCATCCCGCGATTCGATAACG 230 653 229 Antisense
GCGATTCGATAACGTCTTCTGGAGT 264 291 240 Antisense
GAGTTGGAGATCTATCTTTCCTGCA 476 397 261 Antisense
Sequence Source Affymetrix Proprietary Database