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[176506_s_at]

Description Y102A11A.A /REP_DB=WormBase Gene ID /WP=CE26473 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_high_8_8 > 41      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 382
(3)
P 		215
(-0.2)
P 		156.5
(-1.4)
P 		72
(-3)
M 		310
B 397.4
(3)
P 		219.2
(-0.8)
P 		191
(-1.5)
P 		119.2
(-3)
P 		278
C 341.2
(3)
P 		225.3
(0.1)
P 		176.6
(-1.2)
P 		103.7
(-3)
P 		238
avr 373.5
(3) 		219.8
(-0.4) 		174.7
(-1.3) 		98.3
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 541.4
(3)
P 		220.4
(-2)
P 		159.6
(-2.9)
P 		198.7
(-2.3)
P 		153.2
(-3)
P 		330.4
(-0.3)
P 		388
B 423.2
(3)
P 		225.7
(-1.3)
P 		170.6
(-2.5)
P 		147.1
(-3)
P 		157.2
(-2.8)
P 		308.4
(0.5)
P 		276
C 354
(3)
P 		281.5
(0.8)
P 		221.1
(-1.1)
P 		159.2
(-3)
P 		160.3
(-3)
P 		252.9
(-0.1)
P 		195
avr 439.5
(3) 		242.5
(-1.2) 		183.8
(-2.4) 		168.3
(-2.8) 		156.9
(-3) 		297.2
(-0) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 139.1
(3)
P 		46.7
(-1.3)
P 		40.9
(-1.6)
P 		10.5
(-3)
M 		129
B 126.7
(3)
P 		54.1
(-1.3)
P 		44.3
(-1.9)
P 		25.4
(-3)
P 		101
C 112.9
(3)
P 		64.8
(-0)
P 		61.6
(-0.2)
P 		17.5
(-3)
P 		95
avr 126.2
(3) 		55.2
(-0.9) 		48.9
(-1.3) 		17.8
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 99.8
(3)
P 		78.4
(1)
P 		34.7
(-3)
P 		50.4
(-1.6)
P 		46.2
(-1.9)
P 		80.4
(1.2)
P 		65
B 147.2
(3)
P 		75.1
(-1)
P 		41.4
(-2.9)
P 		39
(-3)
P 		63.9
(-1.6)
P 		115
(1.2)
P 		108
C 131.2
(3)
P 		85.9
(0.3)
P 		56.3
(-1.5)
P 		32
(-3)
P 		51.9
(-1.8)
P 		84.7
(0.2)
P 		99
avr 126.1
(3) 		79.8
(-0.2) 		44.1
(-2.7) 		40.5
(-3) 		54
(-2.1) 		93.4
(0.7) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176506_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19622
Sequence Type Exemplar sequence
Representative Public ID Y102A11A.A NCBI
Target Description Y102A11A.A /REP_DB=WormBase Gene ID /WP=CE26473 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075976 NCBI Caenorhabditis elegans Y102A11A.8 (Y102A11A.8) mRNA, complete cds. 11/11 None
SNAP00000043294 ENSEMBL cdna:SNAP chromosome:CEL140:X:2039702:2041745:-1 11/11 None
GENEFINDER00000043305 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2039702:2045907:-1 11/11 None
Y102A11A.8 ENSEMBL cdna:known chromosome:CEL140:X:2039416:2046309:-1 gene:Y102A11A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2039701-2042972(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A11A.8
Entrez Gene 180518 Entrez gene
SwissProt Q95XJ7 EMBL-EBI
WormBase CE27227 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25533.1.S1_AT fibroblast growth factor receptor-like 1 cfa
CHICKEN:GGA.8771.1.S1_AT fibroblast growth factor receptor-like 1 gga
HG-U133_PLUS_2:223321_S_AT fibroblast growth factor receptor-like 1 hs
HG-U133B:223321_S_AT fibroblast growth factor receptor-like 1 hs
HU35KSUBC:RC_AA434090_AT fibroblast growth factor receptor-like 1 hs
HG-U133B:223648_S_AT fibroblast growth factor receptor-like 1 hs
HG-U133_PLUS_2:223648_S_AT fibroblast growth factor receptor-like 1 hs
U133_X3P:G13447748_3P_A_AT fibroblast growth factor receptor-like 1 hs
U133_X3P:G13183617_3P_A_AT fibroblast growth factor receptor-like 1 hs
HG-U95C:60519_AT fibroblast growth factor receptor-like 1 hs
MOE430A:1451912_A_AT fibroblast growth factor receptor-like 1 mm
MOUSE430_2:1451912_A_AT fibroblast growth factor receptor-like 1 mm
MOUSE430A_2:1451912_A_AT fibroblast growth factor receptor-like 1 mm
MG-U74BV2:111863_AT fibroblast growth factor receptor-like 1 mm
MOE430B:1447878_S_AT fibroblast growth factor receptor-like 1 mm
MOUSE430_2:1447878_S_AT fibroblast growth factor receptor-like 1 mm
MU19KSUBA:TC17535_AT Fibroblast growth factor receptor-like 1 (Fgfrl1), mRNA mm
MU19KSUBA:TC17535_G_AT Fibroblast growth factor receptor-like 1 (Fgfrl1), mRNA mm
MU19KSUBB:TC34391_AT Fibroblast growth factor receptor-like 1 (Fgfrl1), mRNA mm
RAE230A:1390374_AT fibroblast growth factor receptor-like 1 rn
RAT230_2:1390374_AT fibroblast growth factor receptor-like 1 rn
Protein Similarities
Method ID Description E-Value
blast AAK39317 Hypothetical protein Y102A11A.8 [Caenorhabditis elegans] ref|NP_508377.1| Y102A11A.8 [Caenorhabditis elegans] 0.0
blast CAE58914 Hypothetical protein CBG02173 [Caenorhabditis briggsae] 0.0
blast XP_783833 PREDICTED: similar to fibroblast growth factor receptor-like 1 [Strongylocentrotus purpuratus] 6.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.8E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.062
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.8E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508377.1 2 7-26,388-410
Y102A11A.8 2 7-26,388-410
SNAP00000043294 1 342-364
GENEFINDER00000043305 1 383-405
Sequence
Target Sequence 
>C. ELEGANS:176506_S_AT
ttgcgtcgtgacaagtgctcagggtcaaattgtttacaagtctgctgagctgaaagttct
ctctgcatacgacttcaccttcccgttcaaatcggacggtttccttgtactacttgcagt
agttgtcactttattcatttttgttgtcatactggcaatcatctggctcaaaaagaatca
ggagtcgacgtcaggcaaagatctgaagccgccaccaccacctcgaatgccaccaccagc
tgctccgcaggataatgattggtccagtgacagaacgctacactcatcaaagcctctcct
tttgcacaattcaatgtttaaacacacaaatccgatcaaatttcatgcagcaacaatgga
cagaaagaatatgataagagctgagagacgattcgatgaagtttcgaacgtctacgacaa
cagtacactccagccataccatattcaacaaagaaacaataattcgatatacaatggtgg
ctaccggacacttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGTCGTGACAAGTGCTCAGGGT 449 703 1068 Antisense
GCTGAAAGTTCTCTCTGCATACGAC 167 297 1116 Antisense
TTCACCTTCCCGTTCAAATCGGACG 220 459 1141 Antisense
TCGGACGGTTTCCTTGTACTACTTG 543 595 1159 Antisense
GTCATACTGGCAATCATCTGGCTCA 389 467 1213 Antisense
GAATCAGGAGTCGACGTCAGGCAAA 623 327 1242 Antisense
AGGCAAAGATCTGAAGCCGCCACCA 165 53 1260 Antisense
GAACGCTACACTCATCAAAGCCTCT 667 345 1340 Antisense
GTCTACGACAACAGTACACTCCAGC 343 467 1477 Antisense
CTCCAGCCATACCATATTCAACAAA 435 235 1495 Antisense
ACAATGGTGGCTACCGGACACTTGA 120 113 1538 Antisense
Sequence Source Affymetrix Proprietary Database