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[176505_at]

Description Y14H12A.1 /REP_DB=WormBase Gene ID /WP=CE26051 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 21      4grp_high_8_8 > 49      6grp_highest_nonorm > 52      6grp_total > 31      4grp_total > 62      6grp_highest_sub > 02      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 862
1 2 3 4 range
A 813.2
(3)
P 		413.7
(-0.6)
P 		654.6
(1.6)
P 		156.1
(-3)
P 		657
B 973.2
(3)
P 		621.3
(0.5)
P 		517.9
(-0.2)
P 		123.8
(-3)
A 		849
C 847.6
(3)
P 		550.2
(0.6)
P 		604.8
(1)
P 		110.8
(-3)
P 		737
avr 878
(3) 		528.4
(0.2) 		592.4
(0.7) 		130.2
(-3) 		748

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 801
1 2 3 4 5 6 range
A 884.3
(3)
P 		705.6
(1.6)
P 		738.6
(1.8)
P 		707.7
(1.6)
P 		397.3
(-0.9)
P 		134.4
(-3)
P 		750
B 681.6
(0.9)
P 		912.9
(3)
P 		780.7
(1.8)
P 		665.5
(0.8)
P 		403.1
(-1.6)
P 		246.7
(-3)
P 		666
C 543.6
(-0)
P 		935.2
(3)
P 		744.5
(1.5)
P 		796.8
(1.9)
P 		334.5
(-1.7)
P 		162.8
(-3)
P 		772
avr 703.2
(1.7) 		851.2
(3) 		754.6
(2.1) 		723.3
(1.9) 		378.3
(-1.2) 		181.3
(-3) 		670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 296.1
(3)
P 		89.8
(-1.5)
P 		171.1
(0.3)
P 		22.9
(-3)
P 		273
B 310.3
(3)
P 		153.4
(-0.3)
P 		120
(-1)
P 		26.4
(-3)
A 		284
C 280.6
(3)
P 		158.2
(0.2)
P 		210.8
(1.4)
P 		18.7
(-3)
P 		262
avr 295.7
(3) 		133.8
(-0.6) 		167.3
(0.2) 		22.7
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 163
(0.6)
P 		251
(3)
P 		160.9
(0.5)
P 		179.5
(1)
P 		119.9
(-0.6)
P 		32.7
(-3)
P 		218
B 237.2
(1.1)
P 		303.9
(3)
P 		189.6
(-0.2)
P 		176.3
(-0.6)
P 		163.8
(-1)
P 		92
(-3)
P 		212
C 201.5
(0.8)
P 		285.4
(3)
P 		189.5
(0.5)
P 		160.2
(-0.3)
P 		108.2
(-1.6)
P 		54.5
(-3)
P 		231
avr 200.6
(0.8) 		280.1
(3) 		180
(0.3) 		172
(0.1) 		130.6
(-1.1) 		59.7
(-3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5227
Sequence Type Exemplar sequence
Representative Public ID Y14H12A.1 NCBI
Target Description Y14H12A.1 /REP_DB=WormBase Gene ID /WP=CE26051 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062304 NCBI Caenorhabditis elegans Y14H12A.1 (Y14H12A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000026463 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3991888:3993802:1 11/11 None
Y14H12A.1 ENSEMBL cdna:known chromosome:CEL140:II:3993256:3993802:1 gene:Y14H12A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026460 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3993297-3993801(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y14H12A.1
Entrez Gene 173741 Entrez gene
SwissProt Q966E1 EMBL-EBI
WormBase CE26051 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494705 Y14H12A.1 [Caenorhabditis elegans] gb|AAK84582.1| Hypothetical protein Y14H12A.1 [Caenorhabditis elegans] 2.0E-71
blast NP_494705 Y14H12A.1 [Caenorhabditis elegans] gb|AAK84582.1| Hypothetical protein Y14H12A.1 [Caenorhabditis elegans] 3.0E-70
blast NP_001022248 K10G6.5 [Caenorhabditis elegans] gb|AAY55870.1| Hypothetical protein K10G6.5 [Caenorhabditis elegans] 9.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494705.1 3 9-31,41-63,76-98
Y14H12A.1 3 9-31,41-63,76-98
GENEFINDER00000026463 4 5-27,40-62,72-94,107-129
Sequence
Target Sequence 
>C. ELEGANS:176505_AT
ttatgctcattgtgctcttttgttcaactgtgattgctcatcttctcatttttcttgcta
ctgtattaccttattggaatttttatacctcgccatcaagtatcatgatgataatggcat
tttttcttgcgatattggtgtccatctgcgtcattttttctttaatctgcataatgtgtc
attcgtcccggtggtcaaagattggctttgtcatcactttcgtgatggcttttataacag
gtgtccttcaaatcgcttcatttgttgtagtggttattgtatctcagactggttctgaat
ttgatggtatctcgactattggtatctgtgcgtattttgcacttgtatcgcgagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGCTCATTGTGCTCTTTTGTTC 381 681 29 Antisense
TGTGATTGCTCATCTTCTCATTTTT 696 555 57 Antisense
TCTCATTTTTCTTGCTACTGTATTA 379 613 72 Antisense
GAATTTTTATACCTCGCCATCAAGT 523 325 105 Antisense
GCGATATTGGTGTCCATCTGCGTCA 471 291 157 Antisense
TCCATCTGCGTCATTTTTTCTTTAA 446 591 169 Antisense
GTCATTCGTCCCGGTGGTCAAAGAT 584 467 206 Antisense
AGATTGGCTTTGTCATCACTTTCGT 628 65 227 Antisense
TAACAGGTGTCCTTCAAATCGCTTC 453 639 263 Antisense
GTATCTCGACTATTGGTATCTGTGC 492 453 335 Antisense
TATTTTGCACTTGTATCGCGAGCTG 140 663 361 Antisense
Sequence Source Affymetrix Proprietary Database