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[176502_at]

Description Y39G10AR.H /REP_DB=WormBase Gene ID /WP=CE21768 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 85      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.9
(3)
A 		4.9
(-1.7)
A 		4.1
(-3)
A 		5
(-1.6)
A 		4
B 16.7
(3)
A 		12.2
(1)
A 		3.1
(-3)
A 		7.4
(-1.1)
A 		14
C 2.6
(-3)
A 		3
(-2.2)
A 		5.5
(3)
A 		4.7
(1.3)
A 		3
avr 9.1
(3) 		6.7
(0.1) 		4.2
(-3) 		5.7
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.1
(-0.6)
A 		3.1
(-3)
A 		3.4
(-2.6)
A 		3.5
(-2.5)
A 		8.1
(3)
A 		4.4
(-1.4)
A 		5
B 6
(-0.7)
A 		3.6
(-2.2)
A 		3.7
(-2.1)
A 		11.8
(3)
A 		2.3
(-3)
A 		6.8
(-0.2)
A 		10
C 1.7
(-3)
A 		6.3
(3)
A 		4.5
(0.7)
A 		2.9
(-1.4)
A 		2.4
(-2.1)
A 		6
(2.6)
A 		5
avr 4.3
(-1.9) 		4.3
(-1.9) 		3.9
(-3) 		6.1
(3) 		4.3
(-1.9) 		5.7
(1.9) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.9
(3)
A 		1.1
(-1.9)
A 		1.1
(-1.9)
A 		0.7
(-3)
A 		2
B 5.3
(3)
A 		3
(0)
A 		0.7
(-3)
A 		1.6
(-1.8)
A 		5
C 0.8
(-3)
A 		0.8
(-3)
A 		1.9
(3)
A 		0.8
(-3)
A 		1
avr 3
(3) 		1.6
(-1.2) 		1.2
(-2.4) 		1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.9
(-2.3)
A 		1.1
(-1.6)
A 		0.7
(-3)
A 		0.9
(-2.3)
A 		2.4
(3)
A 		1.1
(-1.6)
A 		2
B 2.1
(0.3)
A 		1.2
(-2.2)
A 		0.9
(-3)
A 		3.1
(3)
A 		0.9
(-3)
A 		2.5
(1.4)
A 		2
C 0.6
(-3)
A 		1.9
(2.6)
A 		1.2
(-0.4)
A 		0.6
(-3)
A 		0.8
(-2.1)
A 		2
(3)
A 		1
avr 1.2
(-1.2) 		1.4
(-0) 		0.9
(-3) 		1.5
(0.6) 		1.4
(-0) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18746
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.H NCBI
Target Description Y39G10AR.H /REP_DB=WormBase Gene ID /WP=CE21768 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39G10AR.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39G10AR.H Y39G10AR.H /REP_DB=WormBase Gene ID /WP=CE21768 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058559 9/11 Negative Strand Matching Probes A 
GENEFINDER00000028492 9/11 Negative Strand Matching Probes None
SNAP00000028455 9/11 Negative Strand Matching Probes None
Y39G10AR.8 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2315200-2316569(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176502_AT
tcgacccacttcttggcgaaggtgcttcgtggtggagtacgaactccgagcaatcttctc
agaagatagaaggagatttcaatttcgatgaagatatctggaagagtgccaacggctccg
aggatgtgaccgacgagtcgatctccacggcagagtgtcgggtcgatcttcgttccaaca
ccgatgagaccgccgggaacggcgtattccagctggttcttttcggcaaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACCCACTTCTTGGCGAAGGTGC 675 601 26 Antisense
CGAAGGTGCTTCGTGGTGGAGTACG 149 253 42 Antisense
GTACGAACTCCGAGCAATCTTCTCA 541 457 62 Antisense
CTGGAAGAGTGCCAACGGCTCCGAG 131 241 123 Antisense
AACGGCTCCGAGGATGTGACCGACG 323 143 136 Antisense
TGTGACCGACGAGTCGATCTCCACG 486 555 150 Antisense
TCTCCACGGCAGAGTGTCGGGTCGA 653 609 167 Antisense
TCGATCTTCGTTCCAACACCGATGA 450 603 188 Antisense
ACCGATGAGACCGCCGGGAACGGCG 34 83 205 Antisense
CCGCCGGGAACGGCGTATTCCAGCT 79 255 215 Antisense
CCAGCTGGTTCTTTTCGGCAAACAG 40 273 234 Antisense
Sequence Source Affymetrix Proprietary Database