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[176500_at]

Description Y39G10AR.Y /REP_DB=WormBase Gene ID /WP=CE26529 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 92      6grp_total > 68      4grp_total > 41      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 222.6
(-3)
P 		323.3
(3)
P 		264.3
(-0.5)
P 		272.3
(-0)
P 		101
B 139.3
(-3)
P 		328
(3)
P 		281.3
(1.5)
P 		242.1
(0.3)
P 		189
C 227.5
(-3)
P 		327.1
(1.3)
P 		365.1
(3)
P 		298.1
(0.1)
P 		138
avr 196.5
(-3) 		326.1
(3) 		303.6
(2) 		270.8
(0.4) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 271.9
(-2.6)
P 		260.9
(-2.8)
P 		250.2
(-3)
P 		296.2
(-2.3)
P 		313.5
(-2)
P 		619.3
(3)
P 		369
B 299
(-1.5)
P 		278.1
(-1.9)
P 		217.5
(-3)
P 		226.1
(-2.8)
P 		305.4
(-1.4)
P 		545.6
(3)
P 		328
C 350.5
(-0.8)
P 		233.9
(-2.8)
P 		279.4
(-2)
P 		224.1
(-3)
P 		406.6
(0.2)
P 		569.6
(3)
P 		346
avr 307.1
(-1.9) 		257.6
(-2.8) 		249
(-3) 		248.8
(-3) 		341.8
(-1.3) 		578.2
(3) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 81.1
(3)
P 		70.2
(1.4)
P 		69.1
(1.3)
P 		39.9
(-3)
P 		41
B 44.4
(-3)
P 		81
(3)
P 		65.2
(0.4)
P 		51.6
(-1.8)
P 		37
C 75.3
(-1)
P 		94
(0.4)
P 		127.2
(3)
P 		50.3
(-3)
P 		77
avr 66.9
(-0.1) 		81.7
(2.2) 		87.2
(3) 		47.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 50.1
(-3)
P 		92.8
(-0.5)
P 		54.5
(-2.7)
P 		75.1
(-1.5)
P 		94.6
(-0.3)
P 		150.8
(3)
P 		101
B 104
(-1)
P 		92.6
(-1.4)
P 		52.8
(-3)
P 		59.9
(-2.7)
P 		124.1
(-0.2)
P 		203.4
(3)
P 		151
C 129.9
(0.5)
P 		71.4
(-1.9)
P 		71.1
(-1.9)
P 		45.1
(-3)
P 		131.6
(0.6)
P 		190.7
(3)
P 		146
avr 94.7
(-1.3) 		85.6
(-1.7) 		59.5
(-3) 		60
(-3) 		116.8
(-0.2) 		181.6
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18740
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.Y NCBI
Target Description Y39G10AR.Y /REP_DB=WormBase Gene ID /WP=CE26529 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058570 NCBI Caenorhabditis elegans ZWiLch (Drosophila) homolog family member (zwl-1) (zwl-1) mRNA, complete cds. 11/11 A 
SNAP00000028471 ENSEMBL cdna:SNAP chromosome:CEL140:I:2402236:2409853:1 11/11 None
GENEFINDER00000028493 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2402236:2409853:1 11/11 None
Y39G10AR.2 ENSEMBL cdna:known chromosome:CEL140:I:2402233:2409957:1 gene:Y39G10AR.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2405092-2409853(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zwl-1
Ensembl Y39G10AR.2
Entrez Gene 171798 Entrez gene
SwissProt Q95XP9 EMBL-EBI
WormBase CE26992 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490971 ZWiLch (Drosophila) homolog family member (zwl-1) [Caenorhabditis elegans] gb|AAK39613.1| Zwilch (drosophila) homolog protein 1 [Caenorhabditis elegans] 0.0
blast CAE60380 Hypothetical protein CBG03981 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176500_AT
ttggtgtggagagcctgagacgccgtgtaatcgacatcttctcgagccaacttctctacc
cgagtgacgagttggagtttattctgcaaacttgcgaaaacgatttaccagctggaaatg
gtgctatgaactcggccgccatctcgctgctccccatcactatggccttggcaactgcga
atcgaatctatgaacttctcaacgaaaaggaccacgtcatccttcccgacctgacacgtc
gaatcctccaaaagtacactgcaagtatgattgaaaagtcgagacgcggtgaaacggaga
ccgagtacacttttgagacgaccctcccgttgcttcgtatgtataaggagggattcatga
gcaagagaccgtgtatttggacttgtgagaactcgaacactgttggagcaaatgttcagg
ctcgtgtgctcacctccctcgagttgcagccatctctggagcatatcaatcgtcttgtga
atgattctcgtccagtttggacggctaccgaggagaagcctgcgatgatcaaggatttga
atgccgattacactgtcgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTGTGGAGAGCCTGAGACGCCG 244 709 566 Antisense
AGACGCCGTGTAATCGACATCTTCT 266 71 583 Antisense
CAACTTCTCTACCCGAGTGACGAGT 677 187 613 Antisense
GAAATGGTGCTATGAACTCGGCCGC 206 361 680 Antisense
TATGGCCTTGGCAACTGCGAATCGA 305 651 726 Antisense
GACACGTCGAATCCTCCAAAAGTAC 657 367 798 Antisense
GAGTACACTTTTGAGACGACCCTCC 636 397 868 Antisense
CCTCCCGTTGCTTCGTATGTATAAG 512 267 888 Antisense
GCAAATGTTCAGGCTCGTGTGCTCA 69 319 973 Antisense
GTGAATGATTCTCGTCCAGTTTGGA 351 481 1042 Antisense
TGAATGCCGATTACACTGTCGTCCA 574 575 1103 Antisense
Sequence Source Affymetrix Proprietary Database